Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 17379 | 1.05 | 0.000931 |
Target: 5'- cUACCAGACCAACAUGCAGUCGGCCUAc -3' miRNA: 3'- -AUGGUCUGGUUGUACGUCAGCCGGAU- -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 15290 | 0.76 | 0.127187 |
Target: 5'- cUGgCGGGCCAGCcugGCGGUCGGCUUGg -3' miRNA: 3'- -AUgGUCUGGUUGua-CGUCAGCCGGAU- -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 6499 | 0.74 | 0.165304 |
Target: 5'- gGCCAGgucaccgccGCCAccgugcGCAUGCGGUUGGCCa- -3' miRNA: 3'- aUGGUC---------UGGU------UGUACGUCAGCCGGau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 29461 | 0.74 | 0.165304 |
Target: 5'- gGCCAGAggcCCAGCAgaaagcgaUGguGUCGGCCa- -3' miRNA: 3'- aUGGUCU---GGUUGU--------ACguCAGCCGGau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 11317 | 0.74 | 0.180139 |
Target: 5'- gGCCGGgcucuACCAACuggagccaGCGGUCGGCCUGc -3' miRNA: 3'- aUGGUC-----UGGUUGua------CGUCAGCCGGAU- -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 9134 | 0.73 | 0.190674 |
Target: 5'- aGCCAGGCCggUAUGCuGUCGcuggucgguguGCCUGg -3' miRNA: 3'- aUGGUCUGGuuGUACGuCAGC-----------CGGAU- -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 8765 | 0.72 | 0.22557 |
Target: 5'- gACUuGGCCAGCGUGCGGgcggCGGUCUu -3' miRNA: 3'- aUGGuCUGGUUGUACGUCa---GCCGGAu -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 16359 | 0.71 | 0.272967 |
Target: 5'- aGCCAGACCAGCGagucggGCGG-CGGCg-- -3' miRNA: 3'- aUGGUCUGGUUGUa-----CGUCaGCCGgau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 16833 | 0.71 | 0.295608 |
Target: 5'- aACCAGGCCGAUA-GCcuGGUCGcGCCg- -3' miRNA: 3'- aUGGUCUGGUUGUaCG--UCAGC-CGGau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 22047 | 0.71 | 0.295608 |
Target: 5'- gGCCAGACCGGCcagGUGCg--CGGUCUGc -3' miRNA: 3'- aUGGUCUGGUUG---UACGucaGCCGGAU- -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 9294 | 0.69 | 0.354025 |
Target: 5'- cACCAuuggcggcGGCCAGCGaggcgGCAG-CGGCCUGg -3' miRNA: 3'- aUGGU--------CUGGUUGUa----CGUCaGCCGGAU- -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 2517 | 0.69 | 0.363008 |
Target: 5'- cGCCAGagcuGCCGAC--GCGGUCGGUCa- -3' miRNA: 3'- aUGGUC----UGGUUGuaCGUCAGCCGGau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 17123 | 0.69 | 0.363008 |
Target: 5'- gGCCAGGCCGAgGguuucgcGCAGcUUGGCCa- -3' miRNA: 3'- aUGGUCUGGUUgUa------CGUC-AGCCGGau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 36008 | 0.69 | 0.363008 |
Target: 5'- cGCCGGACaggcgCGACAUGCGGgCGGCg-- -3' miRNA: 3'- aUGGUCUG-----GUUGUACGUCaGCCGgau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 5857 | 0.69 | 0.39089 |
Target: 5'- aGCCAGGCCGcuacACcgGCccUCGGCCg- -3' miRNA: 3'- aUGGUCUGGU----UGuaCGucAGCCGGau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 11353 | 0.68 | 0.40049 |
Target: 5'- cGCCAGAgCCAGCGccacgcccGCAG-CGGCCa- -3' miRNA: 3'- aUGGUCU-GGUUGUa-------CGUCaGCCGGau -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 20163 | 0.68 | 0.410239 |
Target: 5'- gGCCauguAGGCCGAC-UGCAuGUUGGUCUGg -3' miRNA: 3'- aUGG----UCUGGUUGuACGU-CAGCCGGAU- -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 1977 | 0.68 | 0.419138 |
Target: 5'- uUGCC-GACCGugGUaucgauaGCuGGUCGGCCUGg -3' miRNA: 3'- -AUGGuCUGGUugUA-------CG-UCAGCCGGAU- -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 20660 | 0.67 | 0.461107 |
Target: 5'- gGCCAGGgCGcCGaGCAGcUCGGCCUc -3' miRNA: 3'- aUGGUCUgGUuGUaCGUC-AGCCGGAu -5' |
|||||||
23119 | 3' | -55.2 | NC_005178.1 | + | 23724 | 0.67 | 0.471677 |
Target: 5'- gACgAGAUCGACGU-CAGUCGcGCCg- -3' miRNA: 3'- aUGgUCUGGUUGUAcGUCAGC-CGGau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home