miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23119 5' -56.5 NC_005178.1 + 25425 0.66 0.555509
Target:  5'- uCUGUGCguCGgCGCAgGCGGcgcgcccaucGGCCAGGc -3'
miRNA:   3'- cGAUACG--GCgGCGUaUGCU----------CCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 13887 0.66 0.555509
Target:  5'- ----cGCCGCCcgGCGUgaACG-GGCCAGc -3'
miRNA:   3'- cgauaCGGCGG--CGUA--UGCuCCGGUCc -5'
23119 5' -56.5 NC_005178.1 + 28261 0.66 0.548936
Target:  5'- cGCUG-GCCGCCGCcaauggugucaGUggggugaccggcgcuGCGGGagcuGCCGGGg -3'
miRNA:   3'- -CGAUaCGGCGGCG-----------UA---------------UGCUC----CGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 8489 0.66 0.544567
Target:  5'- cGCcGUGCCGCC-CAUcagGCGAaGGuuguaguaguCCAGGg -3'
miRNA:   3'- -CGaUACGGCGGcGUA---UGCU-CC----------GGUCC- -5'
23119 5' -56.5 NC_005178.1 + 24002 0.66 0.544567
Target:  5'- cGCUGacCCGCCGCAUagGCGAG-CUGGa -3'
miRNA:   3'- -CGAUacGGCGGCGUA--UGCUCcGGUCc -5'
23119 5' -56.5 NC_005178.1 + 4988 0.66 0.544567
Target:  5'- ---cUGUCGCCGCu-----GGCCAGGu -3'
miRNA:   3'- cgauACGGCGGCGuaugcuCCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 5797 0.66 0.533696
Target:  5'- ----cGUCGCCgGCAUuaccuCG-GGCCAGGc -3'
miRNA:   3'- cgauaCGGCGG-CGUAu----GCuCCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 17312 0.66 0.522903
Target:  5'- cGCg--GCCGCUcgGCGUGCGAGaggcuCCAGa -3'
miRNA:   3'- -CGauaCGGCGG--CGUAUGCUCc----GGUCc -5'
23119 5' -56.5 NC_005178.1 + 5877 0.66 0.521828
Target:  5'- cCUcgGCCGCC-CAUcguccagcGCGAGacgcgccGCCAGGu -3'
miRNA:   3'- cGAuaCGGCGGcGUA--------UGCUC-------CGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 15272 0.66 0.512195
Target:  5'- gGCUucaucGcCCGCCGCcugGCG-GGCCAGc -3'
miRNA:   3'- -CGAua---C-GGCGGCGua-UGCuCCGGUCc -5'
23119 5' -56.5 NC_005178.1 + 27655 0.67 0.501578
Target:  5'- --cGUGCCGCCGCugcCGuGGgCAuGGg -3'
miRNA:   3'- cgaUACGGCGGCGuauGCuCCgGU-CC- -5'
23119 5' -56.5 NC_005178.1 + 27156 0.67 0.501578
Target:  5'- ----cGCCGCCGCucGCaAGGCCAu- -3'
miRNA:   3'- cgauaCGGCGGCGuaUGcUCCGGUcc -5'
23119 5' -56.5 NC_005178.1 + 2848 0.67 0.500522
Target:  5'- --gAUGCCGCgccgggucgaaCGgAUGCGGaacggcuGGCCAGGg -3'
miRNA:   3'- cgaUACGGCG-----------GCgUAUGCU-------CCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 9345 0.67 0.500522
Target:  5'- cGCUcaggagcGUGCCGCCaGCA---GucGCCAGGg -3'
miRNA:   3'- -CGA-------UACGGCGG-CGUaugCucCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 26186 0.67 0.49106
Target:  5'- gGCggugGCCGCUGCGgGCGuGGCgCuGGc -3'
miRNA:   3'- -CGaua-CGGCGGCGUaUGCuCCG-GuCC- -5'
23119 5' -56.5 NC_005178.1 + 33785 0.67 0.480645
Target:  5'- gGCaugGUGCCGCC-CuugGCGAuGGCCcGGc -3'
miRNA:   3'- -CGa--UACGGCGGcGua-UGCU-CCGGuCC- -5'
23119 5' -56.5 NC_005178.1 + 19932 0.67 0.470338
Target:  5'- --aGUGCCGCCGCAgugauCGAGcGCgCAc- -3'
miRNA:   3'- cgaUACGGCGGCGUau---GCUC-CG-GUcc -5'
23119 5' -56.5 NC_005178.1 + 8563 0.67 0.470338
Target:  5'- uGCUAUcGgUGCCGCcc---AGGCCAGGg -3'
miRNA:   3'- -CGAUA-CgGCGGCGuaugcUCCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 22158 0.67 0.460145
Target:  5'- cGCgcUGCUGCCGguUACGGcuucuggcagcuGGCCuauGGc -3'
miRNA:   3'- -CGauACGGCGGCguAUGCU------------CCGGu--CC- -5'
23119 5' -56.5 NC_005178.1 + 6730 0.67 0.454086
Target:  5'- gGCUgAUG-CGCCGCGUAgacgccggcccagguCGAGGCCGc- -3'
miRNA:   3'- -CGA-UACgGCGGCGUAU---------------GCUCCGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.