miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23119 5' -56.5 NC_005178.1 + 17416 1.13 0.000225
Target:  5'- cGCUAUGCCGCCGCAUACGAGGCCAGGg -3'
miRNA:   3'- -CGAUACGGCGGCGUAUGCUCCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 13887 0.66 0.555509
Target:  5'- ----cGCCGCCcgGCGUgaACG-GGCCAGc -3'
miRNA:   3'- cgauaCGGCGG--CGUA--UGCuCCGGUCc -5'
23119 5' -56.5 NC_005178.1 + 28261 0.66 0.548936
Target:  5'- cGCUG-GCCGCCGCcaauggugucaGUggggugaccggcgcuGCGGGagcuGCCGGGg -3'
miRNA:   3'- -CGAUaCGGCGGCG-----------UA---------------UGCUC----CGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 4988 0.66 0.544567
Target:  5'- ---cUGUCGCCGCu-----GGCCAGGu -3'
miRNA:   3'- cgauACGGCGGCGuaugcuCCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 5877 0.66 0.521828
Target:  5'- cCUcgGCCGCC-CAUcguccagcGCGAGacgcgccGCCAGGu -3'
miRNA:   3'- cGAuaCGGCGGcGUA--------UGCUC-------CGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 27156 0.67 0.501578
Target:  5'- ----cGCCGCCGCucGCaAGGCCAu- -3'
miRNA:   3'- cgauaCGGCGGCGuaUGcUCCGGUcc -5'
23119 5' -56.5 NC_005178.1 + 27655 0.67 0.501578
Target:  5'- --cGUGCCGCCGCugcCGuGGgCAuGGg -3'
miRNA:   3'- cgaUACGGCGGCGuauGCuCCgGU-CC- -5'
23119 5' -56.5 NC_005178.1 + 26186 0.67 0.49106
Target:  5'- gGCggugGCCGCUGCGgGCGuGGCgCuGGc -3'
miRNA:   3'- -CGaua-CGGCGGCGUaUGCuCCG-GuCC- -5'
23119 5' -56.5 NC_005178.1 + 19932 0.67 0.470338
Target:  5'- --aGUGCCGCCGCAgugauCGAGcGCgCAc- -3'
miRNA:   3'- cgaUACGGCGGCGUau---GCUC-CG-GUcc -5'
23119 5' -56.5 NC_005178.1 + 22158 0.67 0.460145
Target:  5'- cGCgcUGCUGCCGguUACGGcuucuggcagcuGGCCuauGGc -3'
miRNA:   3'- -CGauACGGCGGCguAUGCU------------CCGGu--CC- -5'
23119 5' -56.5 NC_005178.1 + 17853 0.76 0.137
Target:  5'- aGCgccUGCCGCCcUcgGCGAGGuCCAGGa -3'
miRNA:   3'- -CGau-ACGGCGGcGuaUGCUCC-GGUCC- -5'
23119 5' -56.5 NC_005178.1 + 23435 0.7 0.315252
Target:  5'- aCUAcGCCGaCGCccaggGCGAcGGCCAGGg -3'
miRNA:   3'- cGAUaCGGCgGCGua---UGCU-CCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 6510 0.69 0.355736
Target:  5'- ----cGCCGCCaccgugcGCAUGCGGuuGGCCAaGGg -3'
miRNA:   3'- cgauaCGGCGG-------CGUAUGCU--CCGGU-CC- -5'
23119 5' -56.5 NC_005178.1 + 32094 0.69 0.374172
Target:  5'- gGCUAUGcCCGUuuCGCGaAUGGucGGCCGGGc -3'
miRNA:   3'- -CGAUAC-GGCG--GCGUaUGCU--CCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 4811 0.68 0.411036
Target:  5'- ----cGCCGCCGCGccuacUACGuccAGGCCAa- -3'
miRNA:   3'- cgauaCGGCGGCGU-----AUGC---UCCGGUcc -5'
23119 5' -56.5 NC_005178.1 + 13826 0.68 0.430294
Target:  5'- gGgaGUuCCGCCGCcagauCGAGGCCgAGGu -3'
miRNA:   3'- -CgaUAcGGCGGCGuau--GCUCCGG-UCC- -5'
23119 5' -56.5 NC_005178.1 + 25425 0.66 0.555509
Target:  5'- uCUGUGCguCGgCGCAgGCGGcgcgcccaucGGCCAGGc -3'
miRNA:   3'- cGAUACG--GCgGCGUaUGCU----------CCGGUCC- -5'
23119 5' -56.5 NC_005178.1 + 21346 0.7 0.299757
Target:  5'- ----cGCUGCgGCAUGgcCGAGGCCGGu -3'
miRNA:   3'- cgauaCGGCGgCGUAU--GCUCCGGUCc -5'
23119 5' -56.5 NC_005178.1 + 20818 0.68 0.411036
Target:  5'- cCUggGCCaGCgcaGCgAUGCGAGGaCCAGGg -3'
miRNA:   3'- cGAuaCGG-CGg--CG-UAUGCUCC-GGUCC- -5'
23119 5' -56.5 NC_005178.1 + 25382 0.68 0.420598
Target:  5'- aGUUGUGCCGCCGacugcuccaggaCGUcGCGguAGGCgCGGGu -3'
miRNA:   3'- -CGAUACGGCGGC------------GUA-UGC--UCCG-GUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.