miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23122 5' -56 NC_005178.1 + 3347 0.68 0.436135
Target:  5'- cGUUCGAcGCCGAGguccaGCACcCGAUGCa -3'
miRNA:   3'- uCGAGUU-CGGUUCg----CGUGcGCUACGc -5'
23122 5' -56 NC_005178.1 + 4478 0.67 0.456408
Target:  5'- cGCUCccGCCcAGCGCuaccggcaGUGGUGCGa -3'
miRNA:   3'- uCGAGuuCGGuUCGCGug------CGCUACGC- -5'
23122 5' -56 NC_005178.1 + 21853 0.67 0.465696
Target:  5'- cGGCUCGaugguccaguccaGGCCGAGgacaGCGCGCu-UGCGc -3'
miRNA:   3'- -UCGAGU-------------UCGGUUCg---CGUGCGcuACGC- -5'
23122 5' -56 NC_005178.1 + 5360 0.67 0.477178
Target:  5'- cGCUCGgugucggcguccAGCUcGGUGCugGUGAggaUGCGg -3'
miRNA:   3'- uCGAGU------------UCGGuUCGCGugCGCU---ACGC- -5'
23122 5' -56 NC_005178.1 + 25331 0.67 0.487737
Target:  5'- cGCUU-GGCCAGGCGCugGaaaaGAgccGCGc -3'
miRNA:   3'- uCGAGuUCGGUUCGCGugCg---CUa--CGC- -5'
23122 5' -56 NC_005178.1 + 24411 0.66 0.498404
Target:  5'- cGCUCAcggaugaagcuGGCCAGGCGCugGa---GCa -3'
miRNA:   3'- uCGAGU-----------UCGGUUCGCGugCgcuaCGc -5'
23122 5' -56 NC_005178.1 + 25801 0.66 0.498404
Target:  5'- uGGCUCGGGCCAcGGCcguggcauauGCGCG-GGUGUc -3'
miRNA:   3'- -UCGAGUUCGGU-UCG----------CGUGCgCUACGc -5'
23122 5' -56 NC_005178.1 + 25916 0.66 0.498404
Target:  5'- cAGCUUu-GCCAGG-GCGCG-GAUGCc -3'
miRNA:   3'- -UCGAGuuCGGUUCgCGUGCgCUACGc -5'
23122 5' -56 NC_005178.1 + 19459 0.66 0.518951
Target:  5'- gGGCU-GGGCCAGGCGC-UGCGGcagguucgccagcUGCu -3'
miRNA:   3'- -UCGAgUUCGGUUCGCGuGCGCU-------------ACGc -5'
23122 5' -56 NC_005178.1 + 26766 0.66 0.530999
Target:  5'- gGGCUC-GGCCAggauggcggcGGCGUAguCGCGGgggcUGCGu -3'
miRNA:   3'- -UCGAGuUCGGU----------UCGCGU--GCGCU----ACGC- -5'
23122 5' -56 NC_005178.1 + 26407 0.68 0.426194
Target:  5'- gGGCggcGGCCAgGGCGCccGCGCuGAUGUGg -3'
miRNA:   3'- -UCGaguUCGGU-UCGCG--UGCG-CUACGC- -5'
23122 5' -56 NC_005178.1 + 10237 0.68 0.426194
Target:  5'- uAGCUCAguaGGCC-GGCGCGCuGC--UGCGc -3'
miRNA:   3'- -UCGAGU---UCGGuUCGCGUG-CGcuACGC- -5'
23122 5' -56 NC_005178.1 + 27965 0.66 0.542039
Target:  5'- aAGCggCGAccGCCcAGCGCAgCGCGgcGCa -3'
miRNA:   3'- -UCGa-GUU--CGGuUCGCGU-GCGCuaCGc -5'
23122 5' -56 NC_005178.1 + 27661 0.7 0.310191
Target:  5'- aAGUcCuuGGCCGAGCGCAcgccCGCGAcGCGa -3'
miRNA:   3'- -UCGaGu-UCGGUUCGCGU----GCGCUaCGC- -5'
23122 5' -56 NC_005178.1 + 8575 0.7 0.326369
Target:  5'- cGCcCAGGCCAGGgGCGCGCaGGgucaccugGCGc -3'
miRNA:   3'- uCGaGUUCGGUUCgCGUGCG-CUa-------CGC- -5'
23122 5' -56 NC_005178.1 + 34641 0.7 0.326369
Target:  5'- cGGCUCGaccuGGCCGAG-GCGCGCcAUGUc -3'
miRNA:   3'- -UCGAGU----UCGGUUCgCGUGCGcUACGc -5'
23122 5' -56 NC_005178.1 + 20807 0.7 0.33469
Target:  5'- uGGUccaaUCAccugGGCC-AGCGCA-GCGAUGCGa -3'
miRNA:   3'- -UCG----AGU----UCGGuUCGCGUgCGCUACGC- -5'
23122 5' -56 NC_005178.1 + 17870 0.69 0.360575
Target:  5'- cGGCgccaUCuucuGGCCAAGCccugGCACGCGGaugGCGg -3'
miRNA:   3'- -UCG----AGu---UCGGUUCG----CGUGCGCUa--CGC- -5'
23122 5' -56 NC_005178.1 + 9815 0.68 0.387823
Target:  5'- uGGCUCGccaGGuCCAGGCGCugcuGCGCGAauCGg -3'
miRNA:   3'- -UCGAGU---UC-GGUUCGCG----UGCGCUacGC- -5'
23122 5' -56 NC_005178.1 + 2888 0.68 0.41639
Target:  5'- gGGUUCAGGCUAcgGGCGCG-GCGGU-CGa -3'
miRNA:   3'- -UCGAGUUCGGU--UCGCGUgCGCUAcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.