miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23122 5' -56 NC_005178.1 + 20753 0.66 0.542039
Target:  5'- cAGCagAGcGCCGGGCGUACcuCGGUGCc -3'
miRNA:   3'- -UCGagUU-CGGUUCGCGUGc-GCUACGc -5'
23122 5' -56 NC_005178.1 + 10434 0.66 0.498404
Target:  5'- uGGCUCGcuGCCAcaaGGCGCugGUacGGUGgCGc -3'
miRNA:   3'- -UCGAGUu-CGGU---UCGCGugCG--CUAC-GC- -5'
23122 5' -56 NC_005178.1 + 3019 0.66 0.509175
Target:  5'- cGCUuccuggacCAGGCCGAGCGUgGCGCccuGGUGCc -3'
miRNA:   3'- uCGA--------GUUCGGUUCGCG-UGCG---CUACGc -5'
23122 5' -56 NC_005178.1 + 8761 0.66 0.520042
Target:  5'- gGGCgacuuGGCC-AGCGUGCGgGcgGCGg -3'
miRNA:   3'- -UCGagu--UCGGuUCGCGUGCgCuaCGC- -5'
23122 5' -56 NC_005178.1 + 10320 0.66 0.520042
Target:  5'- uAGCcgaGGGCCGGGCGCGgagggGCGAaGCGc -3'
miRNA:   3'- -UCGag-UUCGGUUCGCGUg----CGCUaCGC- -5'
23122 5' -56 NC_005178.1 + 22271 0.66 0.520042
Target:  5'- aGGCUgGcccGCCAGGCgGCGgGCGAUGa- -3'
miRNA:   3'- -UCGAgUu--CGGUUCG-CGUgCGCUACgc -5'
23122 5' -56 NC_005178.1 + 25720 0.66 0.520042
Target:  5'- aAGCUCGacAGCCuccAGGCGCGCcUGaAUGCu -3'
miRNA:   3'- -UCGAGU--UCGG---UUCGCGUGcGC-UACGc -5'
23122 5' -56 NC_005178.1 + 3540 0.66 0.530999
Target:  5'- cGGCUCGGGCUAcGUcaaccacaugauGCGCGaCGAgGCGg -3'
miRNA:   3'- -UCGAGUUCGGUuCG------------CGUGC-GCUaCGC- -5'
23122 5' -56 NC_005178.1 + 16351 0.66 0.542039
Target:  5'- cGCUCAccAGCCAgaccAGCGaguCGgGcgGCGg -3'
miRNA:   3'- uCGAGU--UCGGU----UCGCgu-GCgCuaCGC- -5'
23122 5' -56 NC_005178.1 + 26195 0.67 0.477178
Target:  5'- cGCUgCGGGCguGGCGCugGCucugGCGu -3'
miRNA:   3'- uCGA-GUUCGguUCGCGugCGcua-CGC- -5'
23122 5' -56 NC_005178.1 + 14300 0.67 0.466733
Target:  5'- cGGCUCcGG-CAAGCGgAUGCGcgGCc -3'
miRNA:   3'- -UCGAGuUCgGUUCGCgUGCGCuaCGc -5'
23122 5' -56 NC_005178.1 + 4478 0.67 0.456408
Target:  5'- cGCUCccGCCcAGCGCuaccggcaGUGGUGCGa -3'
miRNA:   3'- uCGAGuuCGGuUCGCGug------CGCUACGC- -5'
23122 5' -56 NC_005178.1 + 12652 0.76 0.127627
Target:  5'- cGGCUCGgcGGCCGGcGCGCugGCGGguggccugguugccUGCGg -3'
miRNA:   3'- -UCGAGU--UCGGUU-CGCGugCGCU--------------ACGC- -5'
23122 5' -56 NC_005178.1 + 9549 0.75 0.157332
Target:  5'- cGCcaaCGAGCgAAGCGCgaGCGCGAUGCc -3'
miRNA:   3'- uCGa--GUUCGgUUCGCG--UGCGCUACGc -5'
23122 5' -56 NC_005178.1 + 6400 0.71 0.272441
Target:  5'- cGCUCGauugucgcGGCgAGGCGCGcCGCGAUGaCa -3'
miRNA:   3'- uCGAGU--------UCGgUUCGCGU-GCGCUAC-Gc -5'
23122 5' -56 NC_005178.1 + 15614 0.7 0.29235
Target:  5'- aGGCUCAGGCCGAGCuguucauggacaugGaggaACGCGAcGCc -3'
miRNA:   3'- -UCGAGUUCGGUUCG--------------Cg---UGCGCUaCGc -5'
23122 5' -56 NC_005178.1 + 16277 0.7 0.301557
Target:  5'- aGGCUC-GGCCGAGcCGUucauggccaugauGCGCuGGUGCGa -3'
miRNA:   3'- -UCGAGuUCGGUUC-GCG-------------UGCG-CUACGC- -5'
23122 5' -56 NC_005178.1 + 22418 0.69 0.382266
Target:  5'- cAGCUCAAgGCCAucaaggaagagccccAGCuGCGCGuCGAguccUGCGa -3'
miRNA:   3'- -UCGAGUU-CGGU---------------UCG-CGUGC-GCU----ACGC- -5'
23122 5' -56 NC_005178.1 + 23222 0.68 0.397202
Target:  5'- cGCUCcuGGUCGAGCGCAucCGCGccgagGUGCc -3'
miRNA:   3'- uCGAGu-UCGGUUCGCGU--GCGC-----UACGc -5'
23122 5' -56 NC_005178.1 + 3347 0.68 0.436135
Target:  5'- cGUUCGAcGCCGAGguccaGCACcCGAUGCa -3'
miRNA:   3'- uCGAGUU-CGGUUCg----CGUGcGCUACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.