Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23122 | 5' | -56 | NC_005178.1 | + | 2888 | 0.68 | 0.41639 |
Target: 5'- gGGUUCAGGCUAcgGGCGCG-GCGGU-CGa -3' miRNA: 3'- -UCGAGUUCGGU--UCGCGUgCGCUAcGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 3019 | 0.66 | 0.509175 |
Target: 5'- cGCUuccuggacCAGGCCGAGCGUgGCGCccuGGUGCc -3' miRNA: 3'- uCGA--------GUUCGGUUCGCG-UGCG---CUACGc -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 3347 | 0.68 | 0.436135 |
Target: 5'- cGUUCGAcGCCGAGguccaGCACcCGAUGCa -3' miRNA: 3'- uCGAGUU-CGGUUCg----CGUGcGCUACGc -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 3540 | 0.66 | 0.530999 |
Target: 5'- cGGCUCGGGCUAcGUcaaccacaugauGCGCGaCGAgGCGg -3' miRNA: 3'- -UCGAGUUCGGUuCG------------CGUGC-GCUaCGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 4478 | 0.67 | 0.456408 |
Target: 5'- cGCUCccGCCcAGCGCuaccggcaGUGGUGCGa -3' miRNA: 3'- uCGAGuuCGGuUCGCGug------CGCUACGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 5360 | 0.67 | 0.477178 |
Target: 5'- cGCUCGgugucggcguccAGCUcGGUGCugGUGAggaUGCGg -3' miRNA: 3'- uCGAGU------------UCGGuUCGCGugCGCU---ACGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 6400 | 0.71 | 0.272441 |
Target: 5'- cGCUCGauugucgcGGCgAGGCGCGcCGCGAUGaCa -3' miRNA: 3'- uCGAGU--------UCGgUUCGCGU-GCGCUAC-Gc -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 8575 | 0.7 | 0.326369 |
Target: 5'- cGCcCAGGCCAGGgGCGCGCaGGgucaccugGCGc -3' miRNA: 3'- uCGaGUUCGGUUCgCGUGCG-CUa-------CGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 8761 | 0.66 | 0.520042 |
Target: 5'- gGGCgacuuGGCC-AGCGUGCGgGcgGCGg -3' miRNA: 3'- -UCGagu--UCGGuUCGCGUGCgCuaCGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 9549 | 0.75 | 0.157332 |
Target: 5'- cGCcaaCGAGCgAAGCGCgaGCGCGAUGCc -3' miRNA: 3'- uCGa--GUUCGgUUCGCG--UGCGCUACGc -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 9815 | 0.68 | 0.387823 |
Target: 5'- uGGCUCGccaGGuCCAGGCGCugcuGCGCGAauCGg -3' miRNA: 3'- -UCGAGU---UC-GGUUCGCG----UGCGCUacGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 10237 | 0.68 | 0.426194 |
Target: 5'- uAGCUCAguaGGCC-GGCGCGCuGC--UGCGc -3' miRNA: 3'- -UCGAGU---UCGGuUCGCGUG-CGcuACGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 10320 | 0.66 | 0.520042 |
Target: 5'- uAGCcgaGGGCCGGGCGCGgagggGCGAaGCGc -3' miRNA: 3'- -UCGag-UUCGGUUCGCGUg----CGCUaCGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 10434 | 0.66 | 0.498404 |
Target: 5'- uGGCUCGcuGCCAcaaGGCGCugGUacGGUGgCGc -3' miRNA: 3'- -UCGAGUu-CGGU---UCGCGugCG--CUAC-GC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 12652 | 0.76 | 0.127627 |
Target: 5'- cGGCUCGgcGGCCGGcGCGCugGCGGguggccugguugccUGCGg -3' miRNA: 3'- -UCGAGU--UCGGUU-CGCGugCGCU--------------ACGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 14300 | 0.67 | 0.466733 |
Target: 5'- cGGCUCcGG-CAAGCGgAUGCGcgGCc -3' miRNA: 3'- -UCGAGuUCgGUUCGCgUGCGCuaCGc -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 15614 | 0.7 | 0.29235 |
Target: 5'- aGGCUCAGGCCGAGCuguucauggacaugGaggaACGCGAcGCc -3' miRNA: 3'- -UCGAGUUCGGUUCG--------------Cg---UGCGCUaCGc -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 16277 | 0.7 | 0.301557 |
Target: 5'- aGGCUC-GGCCGAGcCGUucauggccaugauGCGCuGGUGCGa -3' miRNA: 3'- -UCGAGuUCGGUUC-GCG-------------UGCG-CUACGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 16351 | 0.66 | 0.542039 |
Target: 5'- cGCUCAccAGCCAgaccAGCGaguCGgGcgGCGg -3' miRNA: 3'- uCGAGU--UCGGU----UCGCgu-GCgCuaCGC- -5' |
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23122 | 5' | -56 | NC_005178.1 | + | 17870 | 0.69 | 0.360575 |
Target: 5'- cGGCgccaUCuucuGGCCAAGCccugGCACGCGGaugGCGg -3' miRNA: 3'- -UCG----AGu---UCGGUUCG----CGUGCGCUa--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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