miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23122 5' -56 NC_005178.1 + 18710 1.1 0.000395
Target:  5'- cAGCUCAAGCCAAGCGCACGCGAUGCGg -3'
miRNA:   3'- -UCGAGUUCGGUUCGCGUGCGCUACGC- -5'
23122 5' -56 NC_005178.1 + 12652 0.76 0.127627
Target:  5'- cGGCUCGgcGGCCGGcGCGCugGCGGguggccugguugccUGCGg -3'
miRNA:   3'- -UCGAGU--UCGGUU-CGCGugCGCU--------------ACGC- -5'
23122 5' -56 NC_005178.1 + 9549 0.75 0.157332
Target:  5'- cGCcaaCGAGCgAAGCGCgaGCGCGAUGCc -3'
miRNA:   3'- uCGa--GUUCGgUUCGCG--UGCGCUACGc -5'
23122 5' -56 NC_005178.1 + 36339 0.73 0.202457
Target:  5'- gGGCUCAGGUCcAGCGCgGCgGCGAgUGCa -3'
miRNA:   3'- -UCGAGUUCGGuUCGCG-UG-CGCU-ACGc -5'
23122 5' -56 NC_005178.1 + 6400 0.71 0.272441
Target:  5'- cGCUCGauugucgcGGCgAGGCGCGcCGCGAUGaCa -3'
miRNA:   3'- uCGAGU--------UCGgUUCGCGU-GCGCUAC-Gc -5'
23122 5' -56 NC_005178.1 + 15614 0.7 0.29235
Target:  5'- aGGCUCAGGCCGAGCuguucauggacaugGaggaACGCGAcGCc -3'
miRNA:   3'- -UCGAGUUCGGUUCG--------------Cg---UGCGCUaCGc -5'
23122 5' -56 NC_005178.1 + 16277 0.7 0.301557
Target:  5'- aGGCUC-GGCCGAGcCGUucauggccaugauGCGCuGGUGCGa -3'
miRNA:   3'- -UCGAGuUCGGUUC-GCG-------------UGCG-CUACGC- -5'
23122 5' -56 NC_005178.1 + 27661 0.7 0.310191
Target:  5'- aAGUcCuuGGCCGAGCGCAcgccCGCGAcGCGa -3'
miRNA:   3'- -UCGaGu-UCGGUUCGCGU----GCGCUaCGC- -5'
23122 5' -56 NC_005178.1 + 34641 0.7 0.326369
Target:  5'- cGGCUCGaccuGGCCGAG-GCGCGCcAUGUc -3'
miRNA:   3'- -UCGAGU----UCGGUUCgCGUGCGcUACGc -5'
23122 5' -56 NC_005178.1 + 8575 0.7 0.326369
Target:  5'- cGCcCAGGCCAGGgGCGCGCaGGgucaccugGCGc -3'
miRNA:   3'- uCGaGUUCGGUUCgCGUGCG-CUa-------CGC- -5'
23122 5' -56 NC_005178.1 + 20807 0.7 0.33469
Target:  5'- uGGUccaaUCAccugGGCC-AGCGCA-GCGAUGCGa -3'
miRNA:   3'- -UCG----AGU----UCGGuUCGCGUgCGCUACGC- -5'
23122 5' -56 NC_005178.1 + 17870 0.69 0.360575
Target:  5'- cGGCgccaUCuucuGGCCAAGCccugGCACGCGGaugGCGg -3'
miRNA:   3'- -UCG----AGu---UCGGUUCG----CGUGCGCUa--CGC- -5'
23122 5' -56 NC_005178.1 + 22418 0.69 0.382266
Target:  5'- cAGCUCAAgGCCAucaaggaagagccccAGCuGCGCGuCGAguccUGCGa -3'
miRNA:   3'- -UCGAGUU-CGGU---------------UCG-CGUGC-GCU----ACGC- -5'
23122 5' -56 NC_005178.1 + 9815 0.68 0.387823
Target:  5'- uGGCUCGccaGGuCCAGGCGCugcuGCGCGAauCGg -3'
miRNA:   3'- -UCGAGU---UC-GGUUCGCG----UGCGCUacGC- -5'
23122 5' -56 NC_005178.1 + 23222 0.68 0.397202
Target:  5'- cGCUCcuGGUCGAGCGCAucCGCGccgagGUGCc -3'
miRNA:   3'- uCGAGu-UCGGUUCGCGU--GCGC-----UACGc -5'
23122 5' -56 NC_005178.1 + 2888 0.68 0.41639
Target:  5'- gGGUUCAGGCUAcgGGCGCG-GCGGU-CGa -3'
miRNA:   3'- -UCGAGUUCGGU--UCGCGUgCGCUAcGC- -5'
23122 5' -56 NC_005178.1 + 10237 0.68 0.426194
Target:  5'- uAGCUCAguaGGCC-GGCGCGCuGC--UGCGc -3'
miRNA:   3'- -UCGAGU---UCGGuUCGCGUG-CGcuACGC- -5'
23122 5' -56 NC_005178.1 + 26407 0.68 0.426194
Target:  5'- gGGCggcGGCCAgGGCGCccGCGCuGAUGUGg -3'
miRNA:   3'- -UCGaguUCGGU-UCGCG--UGCG-CUACGC- -5'
23122 5' -56 NC_005178.1 + 3347 0.68 0.436135
Target:  5'- cGUUCGAcGCCGAGguccaGCACcCGAUGCa -3'
miRNA:   3'- uCGAGUU-CGGUUCg----CGUGcGCUACGc -5'
23122 5' -56 NC_005178.1 + 4478 0.67 0.456408
Target:  5'- cGCUCccGCCcAGCGCuaccggcaGUGGUGCGa -3'
miRNA:   3'- uCGAGuuCGGuUCGCGug------CGCUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.