Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 37120 | 0.7 | 0.470672 |
Target: 5'- -cGACGaCCUCCucGCCGaGGUCCAGGa -3' miRNA: 3'- gaCUGC-GGAGGu-UGGUgUUAGGUCUg -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 34874 | 0.68 | 0.603325 |
Target: 5'- -gGACGCCUCgGgcgaucacugugcGCCGCcuGAUCgAGGCa -3' miRNA: 3'- gaCUGCGGAGgU-------------UGGUG--UUAGgUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 34443 | 0.68 | 0.604478 |
Target: 5'- cCUGGCGCCgagCCAGCUuaucgugaaauACAucgaCCAGAUc -3' miRNA: 3'- -GACUGCGGa--GGUUGG-----------UGUua--GGUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 34338 | 0.67 | 0.616019 |
Target: 5'- gCUGACGUUgCCGACCuugcgcaggaacGCAuagaccugGUCCAGGCu -3' miRNA: 3'- -GACUGCGGaGGUUGG------------UGU--------UAGGUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 31585 | 0.7 | 0.457019 |
Target: 5'- gUGAcCGCCgCCGGCCugGaccugguccgccccGUCCAGGCc -3' miRNA: 3'- gACU-GCGGaGGUUGGugU--------------UAGGUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 30834 | 0.69 | 0.499667 |
Target: 5'- aUGGCGgcaCCUCCuggcucagcagugaGGCCGCccGGUCCAGGCg -3' miRNA: 3'- gACUGC---GGAGG--------------UUGGUG--UUAGGUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 28229 | 0.67 | 0.639136 |
Target: 5'- -cGGCGCC----GCCGCuAUCCAGGCc -3' miRNA: 3'- gaCUGCGGagguUGGUGuUAGGUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 27609 | 0.67 | 0.649534 |
Target: 5'- -cGACGCgCUCCAGCaacaACAGgaugcgcuggcccUCCAGGg -3' miRNA: 3'- gaCUGCG-GAGGUUGg---UGUU-------------AGGUCUg -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 27310 | 0.7 | 0.460151 |
Target: 5'- -cGAUGCgUCCGGCCAU-GUCgCGGACg -3' miRNA: 3'- gaCUGCGgAGGUUGGUGuUAG-GUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 27087 | 0.66 | 0.696593 |
Target: 5'- gCUGGa-CCggagCauuGCCGCGAUCCAGGCg -3' miRNA: 3'- -GACUgcGGa---Ggu-UGGUGUUAGGUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 25725 | 0.66 | 0.73034 |
Target: 5'- -cGACaGCCUCCAggcgcGCCugAAUgcugCCAGGg -3' miRNA: 3'- gaCUG-CGGAGGU-----UGGugUUA----GGUCUg -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 24742 | 0.68 | 0.592964 |
Target: 5'- -aGACGCCgaacauggCGGCCGCGAccUCCAGGg -3' miRNA: 3'- gaCUGCGGag------GUUGGUGUU--AGGUCUg -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 22596 | 0.69 | 0.502938 |
Target: 5'- aUGGCgGCCU-CGACCAC-GUCCAGgACg -3' miRNA: 3'- gACUG-CGGAgGUUGGUGuUAGGUC-UG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 20888 | 0.66 | 0.73034 |
Target: 5'- aUGAcCGCCcugaccaCCGACCGCAAcaccccgcUCCAGgACg -3' miRNA: 3'- gACU-GCGGa------GGUUGGUGUU--------AGGUC-UG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 20488 | 0.71 | 0.409524 |
Target: 5'- aUGGCgGCCUCCGGCCGCAuggCgaAGAUg -3' miRNA: 3'- gACUG-CGGAGGUUGGUGUua-Gg-UCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 20264 | 0.67 | 0.627575 |
Target: 5'- uCUGACGCCcccaCCAGCCuuuggccUCCAGGa -3' miRNA: 3'- -GACUGCGGa---GGUUGGuguu---AGGUCUg -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 20154 | 0.66 | 0.696593 |
Target: 5'- ---cCGUCUUCAGCUACGccCCGGACg -3' miRNA: 3'- gacuGCGGAGGUUGGUGUuaGGUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 20086 | 0.69 | 0.524975 |
Target: 5'- gUGACGCUgUCCAugaccGCCACAuacAUCCAGu- -3' miRNA: 3'- gACUGCGG-AGGU-----UGGUGU---UAGGUCug -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 19340 | 1.09 | 0.000922 |
Target: 5'- cCUGACGCCUCCAACCACAAUCCAGACc -3' miRNA: 3'- -GACUGCGGAGGUUGGUGUUAGGUCUG- -5' |
|||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 15247 | 0.68 | 0.581486 |
Target: 5'- gCUG-CGCCacuucCCGGCCGCAGaCCAcGACg -3' miRNA: 3'- -GACuGCGGa----GGUUGGUGUUaGGU-CUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home