Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23124 | 5' | -56.7 | NC_005178.1 | + | 35802 | 0.68 | 0.419557 |
Target: 5'- cCU-CGCGGGUccGCUCAAGgcGGCCc- -3' miRNA: 3'- -GAcGCGCCCGa-CGAGUUCuuUCGGcc -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 33698 | 0.69 | 0.330111 |
Target: 5'- aUGCGCGGcaaGCUGCUguGc--GGCCGGu -3' miRNA: 3'- gACGCGCC---CGACGAguUcuuUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 33345 | 0.66 | 0.500794 |
Target: 5'- uCU-CGCGGGCacGCUCGAcauacGAAGCUGGc -3' miRNA: 3'- -GAcGCGCCCGa-CGAGUUc----UUUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 33196 | 0.75 | 0.143801 |
Target: 5'- gCUGCGCgaccGGaGUUGCUCGGGGgugaucgugccgAGGCCGGg -3' miRNA: 3'- -GACGCG----CC-CGACGAGUUCU------------UUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 33012 | 0.7 | 0.313997 |
Target: 5'- aCUGgGCGGcGUccgGCUCGauGGGcAGGCCGGa -3' miRNA: 3'- -GACgCGCC-CGa--CGAGU--UCU-UUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 32136 | 0.68 | 0.413788 |
Target: 5'- -gGCGgGGGCucuugcccccgaccaUGCagAGGuGAGCCGGg -3' miRNA: 3'- gaCGCgCCCG---------------ACGagUUCuUUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 31717 | 0.67 | 0.479788 |
Target: 5'- uCUGCGCGGGUgucGUUCcuGAuaaugGAGCCc- -3' miRNA: 3'- -GACGCGCCCGa--CGAGuuCU-----UUCGGcc -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 30633 | 0.66 | 0.522196 |
Target: 5'- gCUGCuGCGGGCcacCUCAGcggcGAGcAGCUGGa -3' miRNA: 3'- -GACG-CGCCCGac-GAGUU----CUU-UCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 28510 | 0.72 | 0.229803 |
Target: 5'- -aGCGCGGcGCggcauUGCUcCAGGucGAAGCCGGc -3' miRNA: 3'- gaCGCGCC-CG-----ACGA-GUUC--UUUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 28459 | 0.68 | 0.419557 |
Target: 5'- --aUGCGGGUgcgaauuuucUGCUCGAcgaucuucuGGAGGCCGGu -3' miRNA: 3'- gacGCGCCCG----------ACGAGUU---------CUUUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 28299 | 0.69 | 0.364139 |
Target: 5'- gCUGCG-GGaGCUGC-CGGGGccGCUGGa -3' miRNA: 3'- -GACGCgCC-CGACGaGUUCUuuCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 26795 | 0.71 | 0.276342 |
Target: 5'- -cGCGgGGGCUGCgu-AGAGAcGuuGGg -3' miRNA: 3'- gaCGCgCCCGACGaguUCUUU-CggCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 26726 | 0.66 | 0.500794 |
Target: 5'- -gGCGCcuGGGacgaaaUGCUCGGcGugGGCCGGa -3' miRNA: 3'- gaCGCG--CCCg-----ACGAGUU-CuuUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 26457 | 0.67 | 0.479788 |
Target: 5'- -aGCGCGGcGCUGCcggcCGAGGuggauGCgGGa -3' miRNA: 3'- gaCGCGCC-CGACGa---GUUCUuu---CGgCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 24398 | 0.67 | 0.469447 |
Target: 5'- gUGCuGCGGGaaccGCUCAcGGAugAAGCUGGc -3' miRNA: 3'- gACG-CGCCCga--CGAGU-UCU--UUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 23487 | 0.71 | 0.255531 |
Target: 5'- gCUGCucgGCcGGCUGCUCAAGGcacugaccGGCUGGg -3' miRNA: 3'- -GACG---CGcCCGACGAGUUCUu-------UCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 22062 | 0.67 | 0.469447 |
Target: 5'- gUGCGCGGucuGCUGCUUgcGcagcuGCUGGg -3' miRNA: 3'- gACGCGCC---CGACGAGuuCuuu--CGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 21043 | 0.71 | 0.255531 |
Target: 5'- -gGCGCGGcgUGCgUCGAGGuuGCCGGa -3' miRNA: 3'- gaCGCGCCcgACG-AGUUCUuuCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 20812 | 0.66 | 0.499734 |
Target: 5'- cCU-CGCGGuuUGCUCGgccaugcAGAucAAGCCGGa -3' miRNA: 3'- -GAcGCGCCcgACGAGU-------UCU--UUCGGCC- -5' |
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23124 | 5' | -56.7 | NC_005178.1 | + | 20210 | 0.74 | 0.174951 |
Target: 5'- -gGCGCGGGCUGC-CGAGcuGGgCGa -3' miRNA: 3'- gaCGCGCCCGACGaGUUCuuUCgGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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