Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23130 | 3' | -57.1 | NC_005178.1 | + | 5352 | 0.67 | 0.436318 |
Target: 5'- cGGUGCGGCcccgagcCCGAGGACUucgaaaUGaGCCucGGCa -3' miRNA: 3'- -UUAUGCCGc------GGUUCCUGA------AC-CGG--CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 8948 | 0.67 | 0.426452 |
Target: 5'- --aGCGGCGCCcaugcuuGGGCgUGGUagggaUGGCg -3' miRNA: 3'- uuaUGCCGCGGuu-----CCUGaACCG-----GCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 12287 | 0.67 | 0.407126 |
Target: 5'- --cGCGGaUGCgcagggcuaauaCAAGGuCUUGGUCGGCc -3' miRNA: 3'- uuaUGCC-GCG------------GUUCCuGAACCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 22652 | 0.67 | 0.388358 |
Target: 5'- --gAUGGCGCUggGGuCgcGGCUGGa -3' miRNA: 3'- uuaUGCCGCGGuuCCuGaaCCGGCCg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 28300 | 0.67 | 0.397671 |
Target: 5'- -cUGCGGgagcUGCCGGGGccGCUggagUGGCUGGUg -3' miRNA: 3'- uuAUGCC----GCGGUUCC--UGA----ACCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 3682 | 0.67 | 0.416721 |
Target: 5'- --cGCGcCGCCAAGGAacUGcCCGGCu -3' miRNA: 3'- uuaUGCcGCGGUUCCUgaACcGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 15860 | 0.67 | 0.436318 |
Target: 5'- aAAUACuGGcCGUCGaaacAGGGCUUGGUgaaGGCg -3' miRNA: 3'- -UUAUG-CC-GCGGU----UCCUGAACCGg--CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 23522 | 0.68 | 0.370167 |
Target: 5'- --cGCGGCGCCGcaauGGCUUcGuGCUGGCc -3' miRNA: 3'- uuaUGCCGCGGUuc--CUGAA-C-CGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 25745 | 0.68 | 0.353433 |
Target: 5'- --cAgGGCgGCCAGGGugUccugguccaugugcaGGCCGGCc -3' miRNA: 3'- uuaUgCCG-CGGUUCCugAa--------------CCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 14447 | 0.68 | 0.360413 |
Target: 5'- ----gGGCGCCGGGGugccggaGCUggucagGGCCaGGCu -3' miRNA: 3'- uuaugCCGCGGUUCC-------UGAa-----CCGG-CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 16325 | 0.68 | 0.361292 |
Target: 5'- uGAUGCGGCcgGCCGGGGAgcgGGUuuCGGUg -3' miRNA: 3'- -UUAUGCCG--CGGUUCCUgaaCCG--GCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 33042 | 0.68 | 0.343992 |
Target: 5'- --gGCGGCaCCGAGGGCauu-CCGGCa -3' miRNA: 3'- uuaUGCCGcGGUUCCUGaaccGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 17329 | 0.68 | 0.382839 |
Target: 5'- --gGCGGgGCCGAGGucgcccagcucggcaGCccGcGCCGGCu -3' miRNA: 3'- uuaUGCCgCGGUUCC---------------UGaaC-CGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 36038 | 0.68 | 0.343992 |
Target: 5'- ---cCGGgGCCGGGGcgaaccagaaccGCUUGGCCcGCu -3' miRNA: 3'- uuauGCCgCGGUUCC------------UGAACCGGcCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 26471 | 0.68 | 0.379189 |
Target: 5'- gGAUACGGuCGCCGAGuuCUccaagcUGGCCGa- -3' miRNA: 3'- -UUAUGCC-GCGGUUCcuGA------ACCGGCcg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 27264 | 0.68 | 0.370167 |
Target: 5'- --gACGuGcCGCCGAGcugcucGACUaccaccagcgUGGCCGGCa -3' miRNA: 3'- uuaUGC-C-GCGGUUC------CUGA----------ACCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 2729 | 0.69 | 0.327295 |
Target: 5'- --gGCGGCGCCAcgccGGuugucGCCGGCa -3' miRNA: 3'- uuaUGCCGCGGUu---CCugaacCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 26723 | 0.69 | 0.301075 |
Target: 5'- --aAgGGCGCCuGGGACgaaaugcucggcgugGGCCGGa -3' miRNA: 3'- uuaUgCCGCGGuUCCUGaa-------------CCGGCCg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 19886 | 0.69 | 0.311207 |
Target: 5'- gGAUG-GGCGCCcuauGGAUgugccgGGCUGGCg -3' miRNA: 3'- -UUAUgCCGCGGuu--CCUGaa----CCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 17994 | 0.69 | 0.335568 |
Target: 5'- uAUGCGGCuGcCCAGGGugcccaGCUccaGGCUGGCg -3' miRNA: 3'- uUAUGCCG-C-GGUUCC------UGAa--CCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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