miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 3' -57.1 NC_005178.1 + 13852 0.66 0.46668
Target:  5'- --cGCccuGCGCCAccGGCUU-GCCGGCa -3'
miRNA:   3'- uuaUGc--CGCGGUucCUGAAcCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 14447 0.68 0.360413
Target:  5'- ----gGGCGCCGGGGugccggaGCUggucagGGCCaGGCu -3'
miRNA:   3'- uuaugCCGCGGUUCC-------UGAa-----CCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 14948 0.66 0.446314
Target:  5'- --gACaGGCGUCcuGGACgUGGUCGGg -3'
miRNA:   3'- uuaUG-CCGCGGuuCCUGaACCGGCCg -5'
23130 3' -57.1 NC_005178.1 + 15860 0.67 0.436318
Target:  5'- aAAUACuGGcCGUCGaaacAGGGCUUGGUgaaGGCg -3'
miRNA:   3'- -UUAUG-CC-GCGGU----UCCUGAACCGg--CCG- -5'
23130 3' -57.1 NC_005178.1 + 16325 0.68 0.361292
Target:  5'- uGAUGCGGCcgGCCGGGGAgcgGGUuuCGGUg -3'
miRNA:   3'- -UUAUGCCG--CGGUUCCUgaaCCG--GCCG- -5'
23130 3' -57.1 NC_005178.1 + 16590 0.7 0.288214
Target:  5'- --gAUGGCGCCGGcgaagaccuGGACgUUGGCCgcuaccGGCa -3'
miRNA:   3'- uuaUGCCGCGGUU---------CCUG-AACCGG------CCG- -5'
23130 3' -57.1 NC_005178.1 + 16676 0.66 0.487516
Target:  5'- --gGCGGUcCUggGcGAUcaGGCCGGCg -3'
miRNA:   3'- uuaUGCCGcGGuuC-CUGaaCCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 16833 0.74 0.133929
Target:  5'- --gGCGGCGau--GGGCUUGGCCuGGCc -3'
miRNA:   3'- uuaUGCCGCgguuCCUGAACCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 17066 0.67 0.426452
Target:  5'- --gGCGGCGaCCuucagcuGGGCggUGGCggCGGCg -3'
miRNA:   3'- uuaUGCCGC-GGuu-----CCUGa-ACCG--GCCG- -5'
23130 3' -57.1 NC_005178.1 + 17154 0.69 0.303391
Target:  5'- aGGUugGuCGCCu-GGGCguccagGGCCGGCu -3'
miRNA:   3'- -UUAugCcGCGGuuCCUGaa----CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 17329 0.68 0.382839
Target:  5'- --gGCGGgGCCGAGGucgcccagcucggcaGCccGcGCCGGCu -3'
miRNA:   3'- uuaUGCCgCGGUUCC---------------UGaaC-CGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 17527 0.67 0.397671
Target:  5'- --aACGGcCGgCAGcGGGCgcgGGCUGGCc -3'
miRNA:   3'- uuaUGCC-GCgGUU-CCUGaa-CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 17994 0.69 0.335568
Target:  5'- uAUGCGGCuGcCCAGGGugcccaGCUccaGGCUGGCg -3'
miRNA:   3'- uUAUGCCG-C-GGUUCC------UGAa--CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 19673 0.7 0.287471
Target:  5'- ---cCGcGUGCC-AGGGCUUGGCCagaagauGGCg -3'
miRNA:   3'- uuauGC-CGCGGuUCCUGAACCGG-------CCG- -5'
23130 3' -57.1 NC_005178.1 + 19886 0.69 0.311207
Target:  5'- gGAUG-GGCGCCcuauGGAUgugccgGGCUGGCg -3'
miRNA:   3'- -UUAUgCCGCGGuu--CCUGaa----CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 20678 1.09 0.000337
Target:  5'- gAAUACGGCGCCAAGGACUUGGCCGGCu -3'
miRNA:   3'- -UUAUGCCGCGGUUCCUGAACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 20866 0.69 0.303391
Target:  5'- cGAUGCcuGCGCCGgccugaucgcccAGGACcgccucgccaUUGGCUGGCa -3'
miRNA:   3'- -UUAUGc-CGCGGU------------UCCUG----------AACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 22652 0.67 0.388358
Target:  5'- --gAUGGCGCUggGGuCgcGGCUGGa -3'
miRNA:   3'- uuaUGCCGCGGuuCCuGaaCCGGCCg -5'
23130 3' -57.1 NC_005178.1 + 23339 0.69 0.327295
Target:  5'- ---cCGGCGCCcugGGGGAaguccaUGGCCaGGCg -3'
miRNA:   3'- uuauGCCGCGG---UUCCUga----ACCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 23522 0.68 0.370167
Target:  5'- --cGCGGCGCCGcaauGGCUUcGuGCUGGCc -3'
miRNA:   3'- uuaUGCCGCGGUuc--CUGAA-C-CGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.