miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 3' -57.1 NC_005178.1 + 2729 0.69 0.327295
Target:  5'- --gGCGGCGCCAcgccGGuugucGCCGGCa -3'
miRNA:   3'- uuaUGCCGCGGUu---CCugaacCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 2758 0.66 0.456436
Target:  5'- --gGCGGUccGCCAGGaGACgcaGCUGGCc -3'
miRNA:   3'- uuaUGCCG--CGGUUC-CUGaacCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 2876 0.7 0.288214
Target:  5'- --aACGGCugGCCAGGGuucagGCUacgGGCgCGGCg -3'
miRNA:   3'- uuaUGCCG--CGGUUCC-----UGAa--CCG-GCCG- -5'
23130 3' -57.1 NC_005178.1 + 3122 0.72 0.203876
Target:  5'- ---uCGGCGCCAGGGAggUcGaGCCGGUc -3'
miRNA:   3'- uuauGCCGCGGUUCCUgaA-C-CGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 3337 0.66 0.445308
Target:  5'- --gACGGCcacacguucgacGCCGAGGuccagcacccgauGCacGGCCGGCc -3'
miRNA:   3'- uuaUGCCG------------CGGUUCC-------------UGaaCCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 3682 0.67 0.416721
Target:  5'- --cGCGcCGCCAAGGAacUGcCCGGCu -3'
miRNA:   3'- uuaUGCcGCGGUUCCUgaACcGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 4523 0.66 0.487516
Target:  5'- ---uCGGUGCCGcccAGGAUguaaagaucgGGuCCGGCg -3'
miRNA:   3'- uuauGCCGCGGU---UCCUGaa--------CC-GGCCG- -5'
23130 3' -57.1 NC_005178.1 + 5352 0.67 0.436318
Target:  5'- cGGUGCGGCcccgagcCCGAGGACUucgaaaUGaGCCucGGCa -3'
miRNA:   3'- -UUAUGCCGc------GGUUCCUGA------AC-CGG--CCG- -5'
23130 3' -57.1 NC_005178.1 + 5522 0.66 0.46668
Target:  5'- ---gUGGCGaCCAGGGucaggucgucgGCgugGGUCGGCa -3'
miRNA:   3'- uuauGCCGC-GGUUCC-----------UGaa-CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 6062 0.73 0.16331
Target:  5'- --gACGGUGCCGAGGGg-UGGCCGc- -3'
miRNA:   3'- uuaUGCCGCGGUUCCUgaACCGGCcg -5'
23130 3' -57.1 NC_005178.1 + 6241 0.69 0.319175
Target:  5'- --cGCGGCGCCAGGcGCauaGCCcGGCg -3'
miRNA:   3'- uuaUGCCGCGGUUCcUGaacCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 8948 0.67 0.426452
Target:  5'- --aGCGGCGCCcaugcuuGGGCgUGGUagggaUGGCg -3'
miRNA:   3'- uuaUGCCGCGGuu-----CCUGaACCG-----GCCG- -5'
23130 3' -57.1 NC_005178.1 + 9895 0.71 0.2153
Target:  5'- cGUGCGcucgGCCAAGGACUuagGGCCGcGCc -3'
miRNA:   3'- uUAUGCcg--CGGUUCCUGAa--CCGGC-CG- -5'
23130 3' -57.1 NC_005178.1 + 10001 0.69 0.33307
Target:  5'- --gGCGGC-CCuguucguugagcugGAGGACUUccaGGUCGGCg -3'
miRNA:   3'- uuaUGCCGcGG--------------UUCCUGAA---CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 10314 0.7 0.252896
Target:  5'- --gGCGGauaGCCGAGGGCcgGGCgCGGa -3'
miRNA:   3'- uuaUGCCg--CGGUUCCUGaaCCG-GCCg -5'
23130 3' -57.1 NC_005178.1 + 12035 0.7 0.252896
Target:  5'- ---cUGGCGCCucGG-CUUGGCCcuGGCc -3'
miRNA:   3'- uuauGCCGCGGuuCCuGAACCGG--CCG- -5'
23130 3' -57.1 NC_005178.1 + 12287 0.67 0.407126
Target:  5'- --cGCGGaUGCgcagggcuaauaCAAGGuCUUGGUCGGCc -3'
miRNA:   3'- uuaUGCC-GCG------------GUUCCuGAACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 12941 0.72 0.209521
Target:  5'- --gGC-GCGCCAGGuGC-UGGCCGGCc -3'
miRNA:   3'- uuaUGcCGCGGUUCcUGaACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 13203 0.66 0.487516
Target:  5'- --gGCGGCguacucauagGCCGcuuugaacggcuGGGuCggGGCCGGCg -3'
miRNA:   3'- uuaUGCCG----------CGGU------------UCCuGaaCCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 13804 0.67 0.426452
Target:  5'- --gACGGCGCagcAGGaACUcGGCuuCGGCg -3'
miRNA:   3'- uuaUGCCGCGgu-UCC-UGAaCCG--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.