Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23130 | 3' | -57.1 | NC_005178.1 | + | 14948 | 0.66 | 0.446314 |
Target: 5'- --gACaGGCGUCcuGGACgUGGUCGGg -3' miRNA: 3'- uuaUG-CCGCGGuuCCUGaACCGGCCg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 33042 | 0.68 | 0.343992 |
Target: 5'- --gGCGGCaCCGAGGGCauu-CCGGCa -3' miRNA: 3'- uuaUGCCGcGGUUCCUGaaccGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 36038 | 0.68 | 0.343992 |
Target: 5'- ---cCGGgGCCGGGGcgaaccagaaccGCUUGGCCcGCu -3' miRNA: 3'- uuauGCCgCGGUUCC------------UGAACCGGcCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 26471 | 0.68 | 0.379189 |
Target: 5'- gGAUACGGuCGCCGAGuuCUccaagcUGGCCGa- -3' miRNA: 3'- -UUAUGCC-GCGGUUCcuGA------ACCGGCcg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 17329 | 0.68 | 0.382839 |
Target: 5'- --gGCGGgGCCGAGGucgcccagcucggcaGCccGcGCCGGCu -3' miRNA: 3'- uuaUGCCgCGGUUCC---------------UGaaC-CGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 28300 | 0.67 | 0.397671 |
Target: 5'- -cUGCGGgagcUGCCGGGGccGCUggagUGGCUGGUg -3' miRNA: 3'- uuAUGCC----GCGGUUCC--UGA----ACCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 3682 | 0.67 | 0.416721 |
Target: 5'- --cGCGcCGCCAAGGAacUGcCCGGCu -3' miRNA: 3'- uuaUGCcGCGGUUCCUgaACcGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 5352 | 0.67 | 0.436318 |
Target: 5'- cGGUGCGGCcccgagcCCGAGGACUucgaaaUGaGCCucGGCa -3' miRNA: 3'- -UUAUGCCGc------GGUUCCUGA------AC-CGG--CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 3337 | 0.66 | 0.445308 |
Target: 5'- --gACGGCcacacguucgacGCCGAGGuccagcacccgauGCacGGCCGGCc -3' miRNA: 3'- uuaUGCCG------------CGGUUCC-------------UGaaCCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 17994 | 0.69 | 0.335568 |
Target: 5'- uAUGCGGCuGcCCAGGGugcccaGCUccaGGCUGGCg -3' miRNA: 3'- uUAUGCCG-C-GGUUCC------UGAa--CCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 19886 | 0.69 | 0.311207 |
Target: 5'- gGAUG-GGCGCCcuauGGAUgugccgGGCUGGCg -3' miRNA: 3'- -UUAUgCCGCGGuu--CCUGaa----CCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 26723 | 0.69 | 0.301075 |
Target: 5'- --aAgGGCGCCuGGGACgaaaugcucggcgugGGCCGGa -3' miRNA: 3'- uuaUgCCGCGGuUCCUGaa-------------CCGGCCg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 28143 | 0.84 | 0.025392 |
Target: 5'- --gGCGGCGcCCAGGGGCUgacGGUCGGCg -3' miRNA: 3'- uuaUGCCGC-GGUUCCUGAa--CCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 6062 | 0.73 | 0.16331 |
Target: 5'- --gACGGUGCCGAGGGg-UGGCCGc- -3' miRNA: 3'- uuaUGCCGCGGUUCCUgaACCGGCcg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 12941 | 0.72 | 0.209521 |
Target: 5'- --gGC-GCGCCAGGuGC-UGGCCGGCc -3' miRNA: 3'- uuaUGcCGCGGUUCcUGaACCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 9895 | 0.71 | 0.2153 |
Target: 5'- cGUGCGcucgGCCAAGGACUuagGGCCGcGCc -3' miRNA: 3'- uUAUGCcg--CGGUUCCUGAa--CCGGC-CG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 10314 | 0.7 | 0.252896 |
Target: 5'- --gGCGGauaGCCGAGGGCcgGGCgCGGa -3' miRNA: 3'- uuaUGCCg--CGGUUCCUGaaCCG-GCCg -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 12035 | 0.7 | 0.252896 |
Target: 5'- ---cUGGCGCCucGG-CUUGGCCcuGGCc -3' miRNA: 3'- uuauGCCGCGGuuCCuGAACCGG--CCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 28560 | 0.7 | 0.259663 |
Target: 5'- --cGCcGCGCCAccgGGGGCgucGCCGGCa -3' miRNA: 3'- uuaUGcCGCGGU---UCCUGaacCGGCCG- -5' |
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23130 | 3' | -57.1 | NC_005178.1 | + | 19673 | 0.7 | 0.287471 |
Target: 5'- ---cCGcGUGCC-AGGGCUUGGCCagaagauGGCg -3' miRNA: 3'- uuauGC-CGCGGuUCCUGAACCGG-------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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