miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 3' -57.1 NC_005178.1 + 16833 0.74 0.133929
Target:  5'- --gGCGGCGau--GGGCUUGGCCuGGCc -3'
miRNA:   3'- uuaUGCCGCgguuCCUGAACCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 23522 0.68 0.370167
Target:  5'- --cGCGGCGCCGcaauGGCUUcGuGCUGGCc -3'
miRNA:   3'- uuaUGCCGCGGUuc--CUGAA-C-CGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 22652 0.67 0.388358
Target:  5'- --gAUGGCGCUggGGuCgcGGCUGGa -3'
miRNA:   3'- uuaUGCCGCGGuuCCuGaaCCGGCCg -5'
23130 3' -57.1 NC_005178.1 + 27765 0.66 0.498098
Target:  5'- --gACGGCGCguAGGcucaucGCUUGGUCcucccuggauGGCu -3'
miRNA:   3'- uuaUGCCGCGguUCC------UGAACCGG----------CCG- -5'
23130 3' -57.1 NC_005178.1 + 2876 0.7 0.288214
Target:  5'- --aACGGCugGCCAGGGuucagGCUacgGGCgCGGCg -3'
miRNA:   3'- uuaUGCCG--CGGUUCC-----UGAa--CCG-GCCG- -5'
23130 3' -57.1 NC_005178.1 + 16590 0.7 0.288214
Target:  5'- --gAUGGCGCCGGcgaagaccuGGACgUUGGCCgcuaccGGCa -3'
miRNA:   3'- uuaUGCCGCGGUU---------CCUG-AACCGG------CCG- -5'
23130 3' -57.1 NC_005178.1 + 17154 0.69 0.303391
Target:  5'- aGGUugGuCGCCu-GGGCguccagGGCCGGCu -3'
miRNA:   3'- -UUAugCcGCGGuuCCUGaa----CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 20866 0.69 0.303391
Target:  5'- cGAUGCcuGCGCCGgccugaucgcccAGGACcgccucgccaUUGGCUGGCa -3'
miRNA:   3'- -UUAUGc-CGCGGU------------UCCUG----------AACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 2729 0.69 0.327295
Target:  5'- --gGCGGCGCCAcgccGGuugucGCCGGCa -3'
miRNA:   3'- uuaUGCCGCGGUu---CCugaacCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 27264 0.68 0.370167
Target:  5'- --gACGuGcCGCCGAGcugcucGACUaccaccagcgUGGCCGGCa -3'
miRNA:   3'- uuaUGC-C-GCGGUUC------CUGA----------ACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 25745 0.68 0.353433
Target:  5'- --cAgGGCgGCCAGGGugUccugguccaugugcaGGCCGGCc -3'
miRNA:   3'- uuaUgCCG-CGGUUCCugAa--------------CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 23339 0.69 0.327295
Target:  5'- ---cCGGCGCCcugGGGGAaguccaUGGCCaGGCg -3'
miRNA:   3'- uuauGCCGCGG---UUCCUga----ACCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 3122 0.72 0.203876
Target:  5'- ---uCGGCGCCAGGGAggUcGaGCCGGUc -3'
miRNA:   3'- uuauGCCGCGGUUCCUgaA-C-CGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 14447 0.68 0.360413
Target:  5'- ----gGGCGCCGGGGugccggaGCUggucagGGCCaGGCu -3'
miRNA:   3'- uuaugCCGCGGUUCC-------UGAa-----CCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 26960 0.71 0.239797
Target:  5'- -cUGCGGUGCCGGcucGCUcGGCCGGUu -3'
miRNA:   3'- uuAUGCCGCGGUUcc-UGAaCCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 6241 0.69 0.319175
Target:  5'- --cGCGGCGCCAGGcGCauaGCCcGGCg -3'
miRNA:   3'- uuaUGCCGCGGUUCcUGaacCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 16325 0.68 0.361292
Target:  5'- uGAUGCGGCcgGCCGGGGAgcgGGUuuCGGUg -3'
miRNA:   3'- -UUAUGCCG--CGGUUCCUgaaCCG--GCCG- -5'
23130 3' -57.1 NC_005178.1 + 31663 0.67 0.387434
Target:  5'- --gGCGGCGCgucucgcgcuggaCGAuGGGCggccgagGGCCGGUg -3'
miRNA:   3'- uuaUGCCGCG-------------GUU-CCUGaa-----CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 27652 0.7 0.252896
Target:  5'- --cGCGGCcCUAAGucCUUGGCCGaGCg -3'
miRNA:   3'- uuaUGCCGcGGUUCcuGAACCGGC-CG- -5'
23130 3' -57.1 NC_005178.1 + 29823 0.69 0.295727
Target:  5'- ----aGGCGCUucuucAGGuCUUcGGCCGGCu -3'
miRNA:   3'- uuaugCCGCGGu----UCCuGAA-CCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.