miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23133 5' -54.6 NC_005178.1 + 4903 0.66 0.657356
Target:  5'- cAUGUCGUaGACGACCAGgucgacggcACCGcUCGg -3'
miRNA:   3'- aUGUAGCAcCUGCUGGUC---------UGGC-AGCg -5'
23133 5' -54.6 NC_005178.1 + 5310 0.66 0.679817
Target:  5'- cUACAUCGgucGGcuCGACCAGGCggcccagggcggCGUCGa -3'
miRNA:   3'- -AUGUAGCa--CCu-GCUGGUCUG------------GCAGCg -5'
23133 5' -54.6 NC_005178.1 + 9122 0.67 0.589727
Target:  5'- -uCAUUGuUGGAUaGCCAGGCCGguaugcugUCGCu -3'
miRNA:   3'- auGUAGC-ACCUGcUGGUCUGGC--------AGCG- -5'
23133 5' -54.6 NC_005178.1 + 20336 0.69 0.47042
Target:  5'- cACGUUccaGGuuauCGACCAGGgCGUCGCg -3'
miRNA:   3'- aUGUAGca-CCu---GCUGGUCUgGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 4963 0.7 0.439966
Target:  5'- gACAUCGaGGuCGGCCGGugCGgugaUGCg -3'
miRNA:   3'- aUGUAGCaCCuGCUGGUCugGCa---GCG- -5'
23133 5' -54.6 NC_005178.1 + 13311 0.7 0.420299
Target:  5'- cGgGUCGagGGGCG-CCGGGCUGcUCGCg -3'
miRNA:   3'- aUgUAGCa-CCUGCuGGUCUGGC-AGCG- -5'
23133 5' -54.6 NC_005178.1 + 33454 0.71 0.39182
Target:  5'- gGCGUCGUGGAUGucguagcCCAcGGCCaccugGUCGCc -3'
miRNA:   3'- aUGUAGCACCUGCu------GGU-CUGG-----CAGCG- -5'
23133 5' -54.6 NC_005178.1 + 14094 0.71 0.39182
Target:  5'- gGCuUCGcgccGGGCGcCCuGGCCGUCGCc -3'
miRNA:   3'- aUGuAGCa---CCUGCuGGuCUGGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 33026 0.71 0.39182
Target:  5'- gGC-UCGaUGGGCaGGCCGGAgCGUUGCc -3'
miRNA:   3'- aUGuAGC-ACCUG-CUGGUCUgGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 22296 0.71 0.347238
Target:  5'- -uCGUCGUGGucuGCGGCCGGGaaGUgGCg -3'
miRNA:   3'- auGUAGCACC---UGCUGGUCUggCAgCG- -5'
23133 5' -54.6 NC_005178.1 + 11467 0.74 0.229751
Target:  5'- gGCAgCGUccgccccucGGGCGAugucguCCAGGCCGUCGCu -3'
miRNA:   3'- aUGUaGCA---------CCUGCU------GGUCUGGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 2766 0.66 0.679817
Target:  5'- --gAUCcUGGACGACgguCAGggugaucuuGCCGUCGCc -3'
miRNA:   3'- augUAGcACCUGCUG---GUC---------UGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.