Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 21180 | 1.09 | 0.00079 |
Target: 5'- cUACAUCGUGGACGACCAGACCGUCGCc -3' miRNA: 3'- -AUGUAGCACCUGCUGGUCUGGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 26641 | 0.66 | 0.646082 |
Target: 5'- gGCAaUGgacgagcGGGCGAgCCAGAUCGUCGa -3' miRNA: 3'- aUGUaGCa------CCUGCU-GGUCUGGCAGCg -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 24901 | 0.66 | 0.634795 |
Target: 5'- gGCAagGcGGAUGACUGGGuCCGuUCGCu -3' miRNA: 3'- aUGUagCaCCUGCUGGUCU-GGC-AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 32719 | 0.66 | 0.634795 |
Target: 5'- gGCGaUGUGGACuGGCC-GACCGUggauagcugcCGCa -3' miRNA: 3'- aUGUaGCACCUG-CUGGuCUGGCA----------GCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 34985 | 0.66 | 0.634795 |
Target: 5'- gGCcgCGcUGGccgaggcgcCGACCAGcCUGUCGCa -3' miRNA: 3'- aUGuaGC-ACCu--------GCUGGUCuGGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 3705 | 0.67 | 0.623506 |
Target: 5'- cUACAUCGgcgccgacaUGGACcGCCAGGCCaa-GCu -3' miRNA: 3'- -AUGUAGC---------ACCUGcUGGUCUGGcagCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 14952 | 0.67 | 0.600962 |
Target: 5'- gGCGUCcUGGACGuggUCGGGCCGccaucCGCa -3' miRNA: 3'- aUGUAGcACCUGCu--GGUCUGGCa----GCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 15969 | 0.67 | 0.589727 |
Target: 5'- aGCAUCGcGGGCGAgguacuCCAG-CCGUUcgGCu -3' miRNA: 3'- aUGUAGCaCCUGCU------GGUCuGGCAG--CG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 28748 | 0.68 | 0.556282 |
Target: 5'- uUACAUCGUcuGGcugaacaagaACcGCCAGGCCGUCaaGCa -3' miRNA: 3'- -AUGUAGCA--CC----------UGcUGGUCUGGCAG--CG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 5744 | 0.68 | 0.54525 |
Target: 5'- cGCAUCgGUGG-CGGCCucgggcacGACCGugUCGCc -3' miRNA: 3'- aUGUAG-CACCuGCUGGu-------CUGGC--AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 32106 | 0.78 | 0.139502 |
Target: 5'- ---uUCGcgaaUGGuCGGCCGGGCCGUCGCg -3' miRNA: 3'- auguAGC----ACCuGCUGGUCUGGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 16676 | 0.76 | 0.169934 |
Target: 5'- gGCgGUCcUGGGCGAUCAGGCCGgCGCa -3' miRNA: 3'- aUG-UAGcACCUGCUGGUCUGGCaGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 8153 | 0.71 | 0.355858 |
Target: 5'- gAgAUCGcccguggGGACGACCAGGUCGuUCGCg -3' miRNA: 3'- aUgUAGCa------CCUGCUGGUCUGGC-AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 21577 | 0.7 | 0.401173 |
Target: 5'- gACAUCGaGGACGACCAaAUCGgcaucuacUCGCc -3' miRNA: 3'- aUGUAGCaCCUGCUGGUcUGGC--------AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 23328 | 0.68 | 0.53429 |
Target: 5'- cUAUGUCGUcuaccuGGGCGAcgagaucggcaCCGGGgCGUCGCa -3' miRNA: 3'- -AUGUAGCA------CCUGCU-----------GGUCUgGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 35192 | 0.68 | 0.54525 |
Target: 5'- cGCAgUCGUGGACGAUgAGAuaGUC-Cg -3' miRNA: 3'- aUGU-AGCACCUGCUGgUCUggCAGcG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 2766 | 0.66 | 0.679817 |
Target: 5'- --gAUCcUGGACGACgguCAGggugaucuuGCCGUCGCc -3' miRNA: 3'- augUAGcACCUGCUG---GUC---------UGGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 22296 | 0.71 | 0.347238 |
Target: 5'- -uCGUCGUGGucuGCGGCCGGGaaGUgGCg -3' miRNA: 3'- auGUAGCACC---UGCUGGUCUggCAgCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 33026 | 0.71 | 0.39182 |
Target: 5'- gGC-UCGaUGGGCaGGCCGGAgCGUUGCc -3' miRNA: 3'- aUGuAGC-ACCUG-CUGGUCUgGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 14094 | 0.71 | 0.39182 |
Target: 5'- gGCuUCGcgccGGGCGcCCuGGCCGUCGCc -3' miRNA: 3'- aUGuAGCa---CCUGCuGGuCUGGCAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home