Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 2766 | 0.66 | 0.679817 |
Target: 5'- --gAUCcUGGACGACgguCAGggugaucuuGCCGUCGCc -3' miRNA: 3'- augUAGcACCUGCUG---GUC---------UGGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 3705 | 0.67 | 0.623506 |
Target: 5'- cUACAUCGgcgccgacaUGGACcGCCAGGCCaa-GCu -3' miRNA: 3'- -AUGUAGC---------ACCUGcUGGUCUGGcagCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 3964 | 0.67 | 0.589727 |
Target: 5'- cGCGUCGccGGucGCGACCAG-CaCGUCGg -3' miRNA: 3'- aUGUAGCa-CC--UGCUGGUCuG-GCAGCg -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 4903 | 0.66 | 0.657356 |
Target: 5'- cAUGUCGUaGACGACCAGgucgacggcACCGcUCGg -3' miRNA: 3'- aUGUAGCAcCUGCUGGUC---------UGGC-AGCg -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 4963 | 0.7 | 0.439966 |
Target: 5'- gACAUCGaGGuCGGCCGGugCGgugaUGCg -3' miRNA: 3'- aUGUAGCaCCuGCUGGUCugGCa---GCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 5310 | 0.66 | 0.679817 |
Target: 5'- cUACAUCGgucGGcuCGACCAGGCggcccagggcggCGUCGa -3' miRNA: 3'- -AUGUAGCa--CCu-GCUGGUCUG------------GCAGCg -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 5744 | 0.68 | 0.54525 |
Target: 5'- cGCAUCgGUGG-CGGCCucgggcacGACCGugUCGCc -3' miRNA: 3'- aUGUAG-CACCuGCUGGu-------CUGGC--AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 7657 | 0.67 | 0.612225 |
Target: 5'- gGCGUUGa--ACGACCAGugGCCGUCGg -3' miRNA: 3'- aUGUAGCaccUGCUGGUC--UGGCAGCg -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 8153 | 0.71 | 0.355858 |
Target: 5'- gAgAUCGcccguggGGACGACCAGGUCGuUCGCg -3' miRNA: 3'- aUgUAGCa------CCUGCUGGUCUGGC-AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 9122 | 0.67 | 0.589727 |
Target: 5'- -uCAUUGuUGGAUaGCCAGGCCGguaugcugUCGCu -3' miRNA: 3'- auGUAGC-ACCUGcUGGUCUGGC--------AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 11467 | 0.74 | 0.229751 |
Target: 5'- gGCAgCGUccgccccucGGGCGAugucguCCAGGCCGUCGCu -3' miRNA: 3'- aUGUaGCA---------CCUGCU------GGUCUGGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 13311 | 0.7 | 0.420299 |
Target: 5'- cGgGUCGagGGGCG-CCGGGCUGcUCGCg -3' miRNA: 3'- aUgUAGCa-CCUGCuGGUCUGGC-AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 14094 | 0.71 | 0.39182 |
Target: 5'- gGCuUCGcgccGGGCGcCCuGGCCGUCGCc -3' miRNA: 3'- aUGuAGCa---CCUGCuGGuCUGGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 14952 | 0.67 | 0.600962 |
Target: 5'- gGCGUCcUGGACGuggUCGGGCCGccaucCGCa -3' miRNA: 3'- aUGUAGcACCUGCu--GGUCUGGCa----GCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 15969 | 0.67 | 0.589727 |
Target: 5'- aGCAUCGcGGGCGAgguacuCCAG-CCGUUcgGCu -3' miRNA: 3'- aUGUAGCaCCUGCU------GGUCuGGCAG--CG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 16676 | 0.76 | 0.169934 |
Target: 5'- gGCgGUCcUGGGCGAUCAGGCCGgCGCa -3' miRNA: 3'- aUG-UAGcACCUGCUGGUCUGGCaGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 19403 | 0.67 | 0.612225 |
Target: 5'- -cCAUCcUGGACGACaUAGACCagcgacUCGCu -3' miRNA: 3'- auGUAGcACCUGCUG-GUCUGGc-----AGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 20336 | 0.69 | 0.47042 |
Target: 5'- cACGUUccaGGuuauCGACCAGGgCGUCGCg -3' miRNA: 3'- aUGUAGca-CCu---GCUGGUCUgGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 21180 | 1.09 | 0.00079 |
Target: 5'- cUACAUCGUGGACGACCAGACCGUCGCc -3' miRNA: 3'- -AUGUAGCACCUGCUGGUCUGGCAGCG- -5' |
|||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 21577 | 0.7 | 0.401173 |
Target: 5'- gACAUCGaGGACGACCAaAUCGgcaucuacUCGCc -3' miRNA: 3'- aUGUAGCaCCUGCUGGUcUGGC--------AGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home