miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23134 5' -54 NC_005178.1 + 24778 0.66 0.681525
Target:  5'- aUUGCCGaGGcguuccuccAGGUGCCGcGUgAACACCu -3'
miRNA:   3'- -AGCGGUaCC---------UUCACGGCuCG-UUGUGG- -5'
23134 5' -54 NC_005178.1 + 20928 0.66 0.670181
Target:  5'- aCGCCGaGGucaucggcGUGCCGguagcGGCAACGuCCa -3'
miRNA:   3'- aGCGGUaCCuu------CACGGC-----UCGUUGU-GG- -5'
23134 5' -54 NC_005178.1 + 34576 0.66 0.670181
Target:  5'- gUGCCuaccgGGGAGcugGCCGGGCGAguCg -3'
miRNA:   3'- aGCGGua---CCUUCa--CGGCUCGUUguGg -5'
23134 5' -54 NC_005178.1 + 36414 0.66 0.670181
Target:  5'- cUCGCCGUGGAA---CgGGGCGACGa- -3'
miRNA:   3'- -AGCGGUACCUUcacGgCUCGUUGUgg -5'
23134 5' -54 NC_005178.1 + 9830 0.66 0.658799
Target:  5'- aUCGCCAaGGcccaGCUGGGCAuggacgaugACACCu -3'
miRNA:   3'- -AGCGGUaCCuucaCGGCUCGU---------UGUGG- -5'
23134 5' -54 NC_005178.1 + 8977 0.66 0.658799
Target:  5'- aUGgCggGGAA-UGCCG-GCGACGCCc -3'
miRNA:   3'- aGCgGuaCCUUcACGGCuCGUUGUGG- -5'
23134 5' -54 NC_005178.1 + 32514 0.66 0.647391
Target:  5'- cCGCacc----GUGCCGGGCGGCAUCa -3'
miRNA:   3'- aGCGguaccuuCACGGCUCGUUGUGG- -5'
23134 5' -54 NC_005178.1 + 28958 0.66 0.647391
Target:  5'- aUCGCCGUGcGccAGGUgacccugcgcGCCccuggccuGGGCGGCACCg -3'
miRNA:   3'- -AGCGGUAC-C--UUCA----------CGG--------CUCGUUGUGG- -5'
23134 5' -54 NC_005178.1 + 14063 0.67 0.624539
Target:  5'- gUGCCuUGaGcAGccgGCCGAGCAGCggGCCg -3'
miRNA:   3'- aGCGGuAC-CuUCa--CGGCUCGUUG--UGG- -5'
23134 5' -54 NC_005178.1 + 25884 0.67 0.624539
Target:  5'- -gGCCAUGcGGcAGuUGCCGGcGCAGauCACCg -3'
miRNA:   3'- agCGGUAC-CU-UC-ACGGCU-CGUU--GUGG- -5'
23134 5' -54 NC_005178.1 + 36525 0.67 0.613119
Target:  5'- -gGCgAUGGGAcgGCCGAGCGguaGCCu -3'
miRNA:   3'- agCGgUACCUUcaCGGCUCGUug-UGG- -5'
23134 5' -54 NC_005178.1 + 11304 0.67 0.613119
Target:  5'- cCGCCcaGGuGGUgGCCGGGCucUACCa -3'
miRNA:   3'- aGCGGuaCCuUCA-CGGCUCGuuGUGG- -5'
23134 5' -54 NC_005178.1 + 27257 0.67 0.601717
Target:  5'- cCGCCA-GGAcGUgccGCCGAGCugcucGACuACCa -3'
miRNA:   3'- aGCGGUaCCUuCA---CGGCUCG-----UUG-UGG- -5'
23134 5' -54 NC_005178.1 + 17804 0.67 0.601717
Target:  5'- cCGCCAUGGuGGcgacgGUCGAGC-GCGgCg -3'
miRNA:   3'- aGCGGUACCuUCa----CGGCUCGuUGUgG- -5'
23134 5' -54 NC_005178.1 + 20660 0.67 0.590342
Target:  5'- -gGCCA-GGGc--GCCGAGCAGCucgGCCu -3'
miRNA:   3'- agCGGUaCCUucaCGGCUCGUUG---UGG- -5'
23134 5' -54 NC_005178.1 + 17184 0.67 0.579006
Target:  5'- aCGCC-UGGAuGUGCUccagGAcauccGCGACGCCc -3'
miRNA:   3'- aGCGGuACCUuCACGG----CU-----CGUUGUGG- -5'
23134 5' -54 NC_005178.1 + 31781 0.68 0.567717
Target:  5'- gCGCU---GAacGGUGCUGGGCGACACg -3'
miRNA:   3'- aGCGGuacCU--UCACGGCUCGUUGUGg -5'
23134 5' -54 NC_005178.1 + 15341 0.68 0.556484
Target:  5'- uUCGCCcUGGuAG-GCCG-GCAAgggacCACCa -3'
miRNA:   3'- -AGCGGuACCuUCaCGGCuCGUU-----GUGG- -5'
23134 5' -54 NC_005178.1 + 25841 0.68 0.549775
Target:  5'- aCGCCAUGGccGUgGCCGgcauuucggcaggucAGUAcCGCCa -3'
miRNA:   3'- aGCGGUACCuuCA-CGGC---------------UCGUuGUGG- -5'
23134 5' -54 NC_005178.1 + 31471 0.68 0.545316
Target:  5'- -gGUgGUGGuAGGUGUCGAGgGGCgGCCa -3'
miRNA:   3'- agCGgUACC-UUCACGGCUCgUUG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.