Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 329 | 0.66 | 0.541963 |
Target: 5'- cCaGGC-UGUCaGGUCCGGCGCUguGCCg -3' miRNA: 3'- uGcCCGcAUAGcUCAGGCUGUGG--CGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 4531 | 0.68 | 0.40182 |
Target: 5'- cCGGccuGCccAUCGAGcCgGACGCCGCCc -3' miRNA: 3'- uGCC---CGcaUAGCUCaGgCUGUGGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 4535 | 0.68 | 0.429966 |
Target: 5'- -aGGaUGUAaagaUCGGGUCCGGCguGCCGCUc -3' miRNA: 3'- ugCCcGCAU----AGCUCAGGCUG--UGGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 6435 | 0.71 | 0.25267 |
Target: 5'- cACGGGCGggccGUCG-GUgCCGAUGCUGaCCg -3' miRNA: 3'- -UGCCCGCa---UAGCuCA-GGCUGUGGC-GG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 7250 | 0.66 | 0.541963 |
Target: 5'- gAUGGGCuaccGUCGAGgcugucuagCCGcagcACGCUGCCg -3' miRNA: 3'- -UGCCCGca--UAGCUCa--------GGC----UGUGGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 8424 | 0.66 | 0.520737 |
Target: 5'- cGCGGGCuGUAguuagcaaaCGcGGUCCaGuaguCGCCGCCa -3' miRNA: 3'- -UGCCCG-CAUa--------GC-UCAGG-Cu---GUGGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 8833 | 0.69 | 0.373996 |
Target: 5'- cCGGcGCGUGcCGGGUgugagccCCGACGCCaCCg -3' miRNA: 3'- uGCC-CGCAUaGCUCA-------GGCUGUGGcGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 8962 | 0.67 | 0.449361 |
Target: 5'- uUGGGCGUGguagggauggCGGGgaaugCCGGCGaCGCCc -3' miRNA: 3'- uGCCCGCAUa---------GCUCa----GGCUGUgGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 10589 | 0.67 | 0.459238 |
Target: 5'- aACcGGCcgagCGAG-CCGGCACCGCa -3' miRNA: 3'- -UGcCCGcauaGCUCaGGCUGUGGCGg -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 10804 | 0.66 | 0.489537 |
Target: 5'- uCGGGUGUcUCc-GUCCGGCcCaCGCCg -3' miRNA: 3'- uGCCCGCAuAGcuCAGGCUGuG-GCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 14641 | 0.68 | 0.410141 |
Target: 5'- aGCGGGCGUgcagguggagAUCGAucuccgcGUCCG-CAUCGgCg -3' miRNA: 3'- -UGCCCGCA----------UAGCU-------CAGGCuGUGGCgG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 15036 | 0.67 | 0.436699 |
Target: 5'- gUGGGUuauuccuggGUGUCGuuGUCCGACGCggacggcucacccuCGCCg -3' miRNA: 3'- uGCCCG---------CAUAGCu-CAGGCUGUG--------------GCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 17604 | 0.69 | 0.377513 |
Target: 5'- gGCGGccgcuguGCGUcgccguggucugacgGUCGAGUCCaGCGCCGgCa -3' miRNA: 3'- -UGCC-------CGCA---------------UAGCUCAGGcUGUGGCgG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 17708 | 0.7 | 0.309199 |
Target: 5'- aGCaGGCGUAacUUGAaUCCaGGCGCUGCCg -3' miRNA: 3'- -UGcCCGCAU--AGCUcAGG-CUGUGGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 19020 | 0.7 | 0.299394 |
Target: 5'- -aGGGCGUuggugaccuggagaAUCGGGUgCG-CGCCGCg -3' miRNA: 3'- ugCCCGCA--------------UAGCUCAgGCuGUGGCGg -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 19667 | 0.67 | 0.46622 |
Target: 5'- cGCuGGCGUAcCGGGUCCaggagcacguccugGACcUCGCCg -3' miRNA: 3'- -UGcCCGCAUaGCUCAGG--------------CUGuGGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 20086 | 0.72 | 0.221843 |
Target: 5'- -gGGGCGUGUCGAauacaCCGcccGCGCCGCg -3' miRNA: 3'- ugCCCGCAUAGCUca---GGC---UGUGGCGg -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 21993 | 1.11 | 0.00032 |
Target: 5'- gACGGGCGUAUCGAGUCCGACACCGCCu -3' miRNA: 3'- -UGCCCGCAUAGCUCAGGCUGUGGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 23234 | 0.72 | 0.239935 |
Target: 5'- uGCGGGcCGUGUCGAaggCCGcGCAuCCGCUu -3' miRNA: 3'- -UGCCC-GCAUAGCUca-GGC-UGU-GGCGG- -5' |
|||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 23882 | 0.7 | 0.301635 |
Target: 5'- uACGGGCaaggCGAGaUUGACGCCGCg -3' miRNA: 3'- -UGCCCGcauaGCUCaGGCUGUGGCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home