Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23135 | 3' | -57.5 | NC_005178.1 | + | 37156 | 0.66 | 0.489537 |
Target: 5'- cCaGGCcUAUcgcacCGAGUCCGAC-CCGCUg -3' miRNA: 3'- uGcCCGcAUA-----GCUCAGGCUGuGGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 34229 | 0.68 | 0.420455 |
Target: 5'- uCGGGCuGUGcuUUGAauggaccagGUCCGACACguuCGCCa -3' miRNA: 3'- uGCCCG-CAU--AGCU---------CAGGCUGUG---GCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 32121 | 0.66 | 0.52919 |
Target: 5'- cCGGGCcgucgcgacauccGUAUCGAGcuguaCGACggcacggucuaucACCGCCg -3' miRNA: 3'- uGCCCG-------------CAUAGCUCag---GCUG-------------UGGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 31794 | 0.76 | 0.118515 |
Target: 5'- cUGGGCGacacgGUCGuGcCCGAgGCCGCCa -3' miRNA: 3'- uGCCCGCa----UAGCuCaGGCUgUGGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 31468 | 0.68 | 0.416686 |
Target: 5'- cCGGGUggugguagGUGUCGAGgggcggccaccccUCGGCACCGUCu -3' miRNA: 3'- uGCCCG--------CAUAGCUCa------------GGCUGUGGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 31127 | 0.67 | 0.439603 |
Target: 5'- aGCGGGUGUGUUuuGUCaucgCGGCGCgccuCGCCg -3' miRNA: 3'- -UGCCCGCAUAGcuCAG----GCUGUG----GCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 28703 | 0.66 | 0.510245 |
Target: 5'- cGCGGuCGguggcGUCGGGgcucacacCCGGCACgCGCCg -3' miRNA: 3'- -UGCCcGCa----UAGCUCa-------GGCUGUG-GCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 28545 | 0.66 | 0.531311 |
Target: 5'- aACGGcGCGgagucggcUAUCGAcGUCuaCGGCGCCGUa -3' miRNA: 3'- -UGCC-CGC--------AUAGCU-CAG--GCUGUGGCGg -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 25828 | 0.66 | 0.499843 |
Target: 5'- cGCGGGUGUcguUCucGUUgGACGgCGCCc -3' miRNA: 3'- -UGCCCGCAu--AGcuCAGgCUGUgGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 25212 | 0.69 | 0.349176 |
Target: 5'- gACGGGCGguuUCGAG-CUGcuGCAUgaCGCCa -3' miRNA: 3'- -UGCCCGCau-AGCUCaGGC--UGUG--GCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 25163 | 0.67 | 0.459238 |
Target: 5'- uCGGGCacgGUUGAG-CCaAgGCCGCCg -3' miRNA: 3'- uGCCCGca-UAGCUCaGGcUgUGGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 23882 | 0.7 | 0.301635 |
Target: 5'- uACGGGCaaggCGAGaUUGACGCCGCg -3' miRNA: 3'- -UGCCCGcauaGCUCaGGCUGUGGCGg -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 23234 | 0.72 | 0.239935 |
Target: 5'- uGCGGGcCGUGUCGAaggCCGcGCAuCCGCUu -3' miRNA: 3'- -UGCCC-GCAUAGCUca-GGC-UGU-GGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 21993 | 1.11 | 0.00032 |
Target: 5'- gACGGGCGUAUCGAGUCCGACACCGCCu -3' miRNA: 3'- -UGCCCGCAUAGCUCAGGCUGUGGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 20086 | 0.72 | 0.221843 |
Target: 5'- -gGGGCGUGUCGAauacaCCGcccGCGCCGCg -3' miRNA: 3'- ugCCCGCAUAGCUca---GGC---UGUGGCGg -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 19667 | 0.67 | 0.46622 |
Target: 5'- cGCuGGCGUAcCGGGUCCaggagcacguccugGACcUCGCCg -3' miRNA: 3'- -UGcCCGCAUaGCUCAGG--------------CUGuGGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 19020 | 0.7 | 0.299394 |
Target: 5'- -aGGGCGUuggugaccuggagaAUCGGGUgCG-CGCCGCg -3' miRNA: 3'- ugCCCGCA--------------UAGCUCAgGCuGUGGCGg -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 17708 | 0.7 | 0.309199 |
Target: 5'- aGCaGGCGUAacUUGAaUCCaGGCGCUGCCg -3' miRNA: 3'- -UGcCCGCAU--AGCUcAGG-CUGUGGCGG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 17604 | 0.69 | 0.377513 |
Target: 5'- gGCGGccgcuguGCGUcgccguggucugacgGUCGAGUCCaGCGCCGgCa -3' miRNA: 3'- -UGCC-------CGCA---------------UAGCUCAGGcUGUGGCgG- -5' |
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23135 | 3' | -57.5 | NC_005178.1 | + | 15036 | 0.67 | 0.436699 |
Target: 5'- gUGGGUuauuccuggGUGUCGuuGUCCGACGCggacggcucacccuCGCCg -3' miRNA: 3'- uGCCCG---------CAUAGCu-CAGGCUGUG--------------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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