miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23135 3' -57.5 NC_005178.1 + 25163 0.67 0.459238
Target:  5'- uCGGGCacgGUUGAG-CCaAgGCCGCCg -3'
miRNA:   3'- uGCCCGca-UAGCUCaGGcUgUGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 19667 0.67 0.46622
Target:  5'- cGCuGGCGUAcCGGGUCCaggagcacguccugGACcUCGCCg -3'
miRNA:   3'- -UGcCCGCAUaGCUCAGG--------------CUGuGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 37156 0.66 0.489537
Target:  5'- cCaGGCcUAUcgcacCGAGUCCGAC-CCGCUg -3'
miRNA:   3'- uGcCCGcAUA-----GCUCAGGCUGuGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 10804 0.66 0.489537
Target:  5'- uCGGGUGUcUCc-GUCCGGCcCaCGCCg -3'
miRNA:   3'- uGCCCGCAuAGcuCAGGCUGuG-GCGG- -5'
23135 3' -57.5 NC_005178.1 + 25828 0.66 0.499843
Target:  5'- cGCGGGUGUcguUCucGUUgGACGgCGCCc -3'
miRNA:   3'- -UGCCCGCAu--AGcuCAGgCUGUgGCGG- -5'
23135 3' -57.5 NC_005178.1 + 28703 0.66 0.510245
Target:  5'- cGCGGuCGguggcGUCGGGgcucacacCCGGCACgCGCCg -3'
miRNA:   3'- -UGCCcGCa----UAGCUCa-------GGCUGUG-GCGG- -5'
23135 3' -57.5 NC_005178.1 + 8424 0.66 0.520737
Target:  5'- cGCGGGCuGUAguuagcaaaCGcGGUCCaGuaguCGCCGCCa -3'
miRNA:   3'- -UGCCCG-CAUa--------GC-UCAGG-Cu---GUGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 32121 0.66 0.52919
Target:  5'- cCGGGCcgucgcgacauccGUAUCGAGcuguaCGACggcacggucuaucACCGCCg -3'
miRNA:   3'- uGCCCG-------------CAUAGCUCag---GCUG-------------UGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 28545 0.66 0.531311
Target:  5'- aACGGcGCGgagucggcUAUCGAcGUCuaCGGCGCCGUa -3'
miRNA:   3'- -UGCC-CGC--------AUAGCU-CAG--GCUGUGGCGg -5'
23135 3' -57.5 NC_005178.1 + 329 0.66 0.541963
Target:  5'- cCaGGC-UGUCaGGUCCGGCGCUguGCCg -3'
miRNA:   3'- uGcCCGcAUAGcUCAGGCUGUGG--CGG- -5'
23135 3' -57.5 NC_005178.1 + 7250 0.66 0.541963
Target:  5'- gAUGGGCuaccGUCGAGgcugucuagCCGcagcACGCUGCCg -3'
miRNA:   3'- -UGCCCGca--UAGCUCa--------GGC----UGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.