miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23135 3' -57.5 NC_005178.1 + 17604 0.69 0.377513
Target:  5'- gGCGGccgcuguGCGUcgccguggucugacgGUCGAGUCCaGCGCCGgCa -3'
miRNA:   3'- -UGCC-------CGCA---------------UAGCUCAGGcUGUGGCgG- -5'
23135 3' -57.5 NC_005178.1 + 8833 0.69 0.373996
Target:  5'- cCGGcGCGUGcCGGGUgugagccCCGACGCCaCCg -3'
miRNA:   3'- uGCC-CGCAUaGCUCA-------GGCUGUGGcGG- -5'
23135 3' -57.5 NC_005178.1 + 25212 0.69 0.349176
Target:  5'- gACGGGCGguuUCGAG-CUGcuGCAUgaCGCCa -3'
miRNA:   3'- -UGCCCGCau-AGCUCaGGC--UGUG--GCGG- -5'
23135 3' -57.5 NC_005178.1 + 17708 0.7 0.309199
Target:  5'- aGCaGGCGUAacUUGAaUCCaGGCGCUGCCg -3'
miRNA:   3'- -UGcCCGCAU--AGCUcAGG-CUGUGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 23882 0.7 0.301635
Target:  5'- uACGGGCaaggCGAGaUUGACGCCGCg -3'
miRNA:   3'- -UGCCCGcauaGCUCaGGCUGUGGCGg -5'
23135 3' -57.5 NC_005178.1 + 19020 0.7 0.299394
Target:  5'- -aGGGCGUuggugaccuggagaAUCGGGUgCG-CGCCGCg -3'
miRNA:   3'- ugCCCGCA--------------UAGCUCAgGCuGUGGCGg -5'
23135 3' -57.5 NC_005178.1 + 6435 0.71 0.25267
Target:  5'- cACGGGCGggccGUCG-GUgCCGAUGCUGaCCg -3'
miRNA:   3'- -UGCCCGCa---UAGCuCA-GGCUGUGGC-GG- -5'
23135 3' -57.5 NC_005178.1 + 23234 0.72 0.239935
Target:  5'- uGCGGGcCGUGUCGAaggCCGcGCAuCCGCUu -3'
miRNA:   3'- -UGCCC-GCAUAGCUca-GGC-UGU-GGCGG- -5'
23135 3' -57.5 NC_005178.1 + 20086 0.72 0.221843
Target:  5'- -gGGGCGUGUCGAauacaCCGcccGCGCCGCg -3'
miRNA:   3'- ugCCCGCAUAGCUca---GGC---UGUGGCGg -5'
23135 3' -57.5 NC_005178.1 + 31794 0.76 0.118515
Target:  5'- cUGGGCGacacgGUCGuGcCCGAgGCCGCCa -3'
miRNA:   3'- uGCCCGCa----UAGCuCaGGCUgUGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 21993 1.11 0.00032
Target:  5'- gACGGGCGUAUCGAGUCCGACACCGCCu -3'
miRNA:   3'- -UGCCCGCAUAGCUCAGGCUGUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.