Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23140 | 5' | -53.1 | NC_005178.1 | + | 8546 | 0.67 | 0.619651 |
Target: 5'- gGUagUGCGCCccaGUCAAUUGGUCaugccgcagGCCGAGc -3' miRNA: 3'- aCG--ACGCGG---CAGUUGACUAG---------UGGUUC- -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 18862 | 0.67 | 0.619651 |
Target: 5'- aGCUG-GCCGUUu-CUGAggACCGGGa -3' miRNA: 3'- aCGACgCGGCAGuuGACUagUGGUUC- -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 25709 | 0.67 | 0.655577 |
Target: 5'- cUGCUGC-CCGUUuuCgugccgaaugaucgcGGUCACCAGGg -3' miRNA: 3'- -ACGACGcGGCAGuuGa--------------CUAGUGGUUC- -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 11685 | 0.67 | 0.665979 |
Target: 5'- gGcCUGCGCacCGUCGaaucGCUGAUCGCUc-- -3' miRNA: 3'- aC-GACGCG--GCAGU----UGACUAGUGGuuc -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 9835 | 0.67 | 0.665979 |
Target: 5'- cUGCUGCGCgaaucgguCGUCAaggcugccacGCUGAUCgaaCAAGc -3' miRNA: 3'- -ACGACGCG--------GCAGU----------UGACUAGug-GUUC- -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 14450 | 0.67 | 0.665979 |
Target: 5'- cGCcgggGUGCCGg-AGCUGGUCaggGCCAGGc -3' miRNA: 3'- aCGa---CGCGGCagUUGACUAG---UGGUUC- -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 2489 | 0.66 | 0.676353 |
Target: 5'- cUGCUGCGCuCGcccUCGGuaacgccCUGAUCGCCc-- -3' miRNA: 3'- -ACGACGCG-GC---AGUU-------GACUAGUGGuuc -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 35109 | 0.66 | 0.687836 |
Target: 5'- cUGuCUGCuGCCGUUgaaGACUGAagcgaggUCGCCAu- -3' miRNA: 3'- -AC-GACG-CGGCAG---UUGACU-------AGUGGUuc -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 35419 | 0.66 | 0.687836 |
Target: 5'- cGCUG-GCCGcCAccgacagccugacGCUGAccgggCGCCAAGg -3' miRNA: 3'- aCGACgCGGCaGU-------------UGACUa----GUGGUUC- -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 31913 | 0.66 | 0.721874 |
Target: 5'- cGCUGC-CgGUCAucggccaucGCUGAUCggcauggGCCGAGc -3' miRNA: 3'- aCGACGcGgCAGU---------UGACUAG-------UGGUUC- -5' |
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23140 | 5' | -53.1 | NC_005178.1 | + | 29819 | 0.66 | 0.72747 |
Target: 5'- aGCUGCG-CGUUcacgccgaaacccuuGGCUgGGUCACCGAc -3' miRNA: 3'- aCGACGCgGCAG---------------UUGA-CUAGUGGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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