miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23145 3' -59.4 NC_005178.1 + 13077 0.66 0.392211
Target:  5'- gAGCGGG---UCGGuCGCGACCuuguacAGCUCGa -3'
miRNA:   3'- -UCGUCCuguGGUC-GCGCUGG------UCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 13260 0.66 0.392211
Target:  5'- cAGCAguuGGACcucGCCguaGGCGCcAUCGGCUCGc -3'
miRNA:   3'- -UCGU---CCUG---UGG---UCGCGcUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 2901 0.66 0.383168
Target:  5'- uGCuGGACAUgGcGCGCcucGGCCAGgUCGa -3'
miRNA:   3'- uCGuCCUGUGgU-CGCG---CUGGUCgAGC- -5'
23145 3' -59.4 NC_005178.1 + 13153 0.66 0.374264
Target:  5'- cGCAGGgcaacggucgGCugCGGCGCGgugaacaugcccACCuGCUUGg -3'
miRNA:   3'- uCGUCC----------UGugGUCGCGC------------UGGuCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 32610 0.66 0.374264
Target:  5'- cAGCGGGcgGCC-GCugGCGGCCAGUUCc -3'
miRNA:   3'- -UCGUCCugUGGuCG--CGCUGGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 32562 0.66 0.374264
Target:  5'- cAGCucGACcugGCCAGCgGCGACCAGgUgGu -3'
miRNA:   3'- -UCGucCUG---UGGUCG-CGCUGGUCgAgC- -5'
23145 3' -59.4 NC_005178.1 + 33186 0.66 0.374264
Target:  5'- gGGUcGcGGCGCU-GCGCGACCGgaguuGCUCGg -3'
miRNA:   3'- -UCGuC-CUGUGGuCGCGCUGGU-----CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 6481 0.66 0.365501
Target:  5'- gAGCuGGugAgCCAGUuCGGCCAGgUCa -3'
miRNA:   3'- -UCGuCCugU-GGUCGcGCUGGUCgAGc -5'
23145 3' -59.4 NC_005178.1 + 30758 0.66 0.365501
Target:  5'- cAGCAGGGCAUCA-C-CGACCAGgaUCa -3'
miRNA:   3'- -UCGUCCUGUGGUcGcGCUGGUCg-AGc -5'
23145 3' -59.4 NC_005178.1 + 31455 0.66 0.35688
Target:  5'- -cCAGGA-ACC-GCugGCGGCCGGCUCGc -3'
miRNA:   3'- ucGUCCUgUGGuCG--CGCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 17078 0.66 0.35688
Target:  5'- cAGCuGGGCGguggCGGCgGCGAUCuGCUCGa -3'
miRNA:   3'- -UCGuCCUGUg---GUCG-CGCUGGuCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 36073 0.66 0.35688
Target:  5'- uGguGGGCaACgGGUGCGACCAcgGCUa- -3'
miRNA:   3'- uCguCCUG-UGgUCGCGCUGGU--CGAgc -5'
23145 3' -59.4 NC_005178.1 + 14748 0.66 0.35688
Target:  5'- uGGCGgauGGACGCCucgccguacuGCuCGACCAGgUCGg -3'
miRNA:   3'- -UCGU---CCUGUGGu---------CGcGCUGGUCgAGC- -5'
23145 3' -59.4 NC_005178.1 + 29811 0.66 0.354322
Target:  5'- uGgAGGAcCGCCAgGCGCuucuucaggucuucGGCCGGCUCc -3'
miRNA:   3'- uCgUCCU-GUGGU-CGCG--------------CUGGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 17328 0.67 0.348404
Target:  5'- cGGCGGGGC-CgAG-GuCGcCCAGCUCGg -3'
miRNA:   3'- -UCGUCCUGuGgUCgC-GCuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 37529 0.67 0.348404
Target:  5'- cGGgAGGGCAUCGGCaaGCuGACC-GCUCu -3'
miRNA:   3'- -UCgUCCUGUGGUCG--CG-CUGGuCGAGc -5'
23145 3' -59.4 NC_005178.1 + 13312 0.67 0.348404
Target:  5'- gGGUcgaGGGGCGCCGggcugcucGCGCugucggugauGACCAGUUCGc -3'
miRNA:   3'- -UCG---UCCUGUGGU--------CGCG----------CUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 478 0.67 0.347564
Target:  5'- -cCGGGACGCCAGCGagugcugccgccuCGuCCAGCgagcCGg -3'
miRNA:   3'- ucGUCCUGUGGUCGC-------------GCuGGUCGa---GC- -5'
23145 3' -59.4 NC_005178.1 + 33801 0.67 0.337601
Target:  5'- uGGCGauGGC-CCGGCGCGucagcuugaaggugGCCAGCUUGg -3'
miRNA:   3'- -UCGUc-CUGuGGUCGCGC--------------UGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 26906 0.67 0.331886
Target:  5'- cGCGGaGACGCCGGCcggggcguuGCGccCCGGCUUa -3'
miRNA:   3'- uCGUC-CUGUGGUCG---------CGCu-GGUCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.