miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23145 3' -59.4 NC_005178.1 + 25068 1.09 0.000217
Target:  5'- cAGCAGGACACCAGCGCGACCAGCUCGg -3'
miRNA:   3'- -UCGUCCUGUGGUCGCGCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 12203 0.77 0.065773
Target:  5'- -cCAGGACACCAGCGCGGcucuuuuCCAGCg-- -3'
miRNA:   3'- ucGUCCUGUGGUCGCGCU-------GGUCGagc -5'
23145 3' -59.4 NC_005178.1 + 8300 0.77 0.064072
Target:  5'- uGGCAGGAUgaaGCCGGCGcCGGCCGaCUCGu -3'
miRNA:   3'- -UCGUCCUG---UGGUCGC-GCUGGUcGAGC- -5'
23145 3' -59.4 NC_005178.1 + 14853 0.75 0.085597
Target:  5'- cGGCAGcGAC-CCGGCGau-CCAGCUCGg -3'
miRNA:   3'- -UCGUC-CUGuGGUCGCgcuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 12672 0.75 0.0933
Target:  5'- uGGCGGGugGCCugguuGCcuGCGGCCuGCUCGc -3'
miRNA:   3'- -UCGUCCugUGGu----CG--CGCUGGuCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 23457 0.74 0.104596
Target:  5'- cGGcCAGGGCGcCCGGCGCGaaGCCGGCcCGc -3'
miRNA:   3'- -UC-GUCCUGU-GGUCGCGC--UGGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 27872 0.73 0.131141
Target:  5'- gAGCaAGGugACC-GCcuCGGCCGGCUCGg -3'
miRNA:   3'- -UCG-UCCugUGGuCGc-GCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 34507 0.73 0.131141
Target:  5'- cGGCGGaccuucGGCACCAGgGCG-CCAcGCUCGg -3'
miRNA:   3'- -UCGUC------CUGUGGUCgCGCuGGU-CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 30494 0.73 0.120527
Target:  5'- gGGCcGGGCACucaaugcggcuCAGCGCGGCCAggacacgacGCUCGa -3'
miRNA:   3'- -UCGuCCUGUG-----------GUCGCGCUGGU---------CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 3961 0.73 0.134867
Target:  5'- gAGCGcGuCGCCGGuCGCGACCAGCacgUCGg -3'
miRNA:   3'- -UCGUcCuGUGGUC-GCGCUGGUCG---AGC- -5'
23145 3' -59.4 NC_005178.1 + 33061 0.73 0.121895
Target:  5'- cGGCAGGugGCCAacuGCggguuuauccggguuGCGACgGGCUCGc -3'
miRNA:   3'- -UCGUCCugUGGU---CG---------------CGCUGgUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 30587 0.71 0.16199
Target:  5'- cGGCAGcGACACCuGGCGCGuguacccgcugcuCCAGCgCGg -3'
miRNA:   3'- -UCGUC-CUGUGG-UCGCGCu------------GGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 24563 0.7 0.21415
Target:  5'- uGCuGGACACCAGCaagccggauaccgGCGACCugGGCcgcuUCGg -3'
miRNA:   3'- uCGuCCUGUGGUCG-------------CGCUGG--UCG----AGC- -5'
23145 3' -59.4 NC_005178.1 + 24881 0.7 0.218173
Target:  5'- cGCAGGcaaccaggccaccCGCCAGCGCG-CCGGC-CGc -3'
miRNA:   3'- uCGUCCu------------GUGGUCGCGCuGGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 14314 0.7 0.203548
Target:  5'- aGGCcGGGCACCucGGCGCGGaugcGCUCGa -3'
miRNA:   3'- -UCGuCCUGUGG--UCGCGCUggu-CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 20828 0.7 0.203548
Target:  5'- cGCAGcGAUgcgaggACCAGgGCG-CCGGCUCa -3'
miRNA:   3'- uCGUC-CUG------UGGUCgCGCuGGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 19477 0.7 0.192883
Target:  5'- cGGCAGGuuCGCCAGCugcucgcgaGCGACCGGgCUg- -3'
miRNA:   3'- -UCGUCCu-GUGGUCG---------CGCUGGUC-GAgc -5'
23145 3' -59.4 NC_005178.1 + 8659 0.69 0.226415
Target:  5'- cGUAGGccuGC-CCAGcCGCGACCAGgUCu -3'
miRNA:   3'- uCGUCC---UGuGGUC-GCGCUGGUCgAGc -5'
23145 3' -59.4 NC_005178.1 + 26949 0.69 0.244965
Target:  5'- aGGguGGAUugCuGCGguGCCGGCUCGc -3'
miRNA:   3'- -UCguCCUGugGuCGCgcUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 30638 0.69 0.238645
Target:  5'- uGCGGGcCACCucAGCgGCGAgCAGCUgGa -3'
miRNA:   3'- uCGUCCuGUGG--UCG-CGCUgGUCGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.