Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23145 | 3' | -59.4 | NC_005178.1 | + | 37529 | 0.67 | 0.348404 |
Target: 5'- cGGgAGGGCAUCGGCaaGCuGACC-GCUCu -3' miRNA: 3'- -UCgUCCUGUGGUCG--CG-CUGGuCGAGc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 37024 | 0.69 | 0.256026 |
Target: 5'- cGCAGGGCACgguuccuggaccgaCGGCGCcACCGuGCUUGu -3' miRNA: 3'- uCGUCCUGUG--------------GUCGCGcUGGU-CGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 36477 | 0.69 | 0.249471 |
Target: 5'- cGGCGGGACggcgggcaacaucaACCAGCGCGuCCAagauuuGCUa- -3' miRNA: 3'- -UCGUCCUG--------------UGGUCGCGCuGGU------CGAgc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 36073 | 0.66 | 0.35688 |
Target: 5'- uGguGGGCaACgGGUGCGACCAcgGCUa- -3' miRNA: 3'- uCguCCUG-UGgUCGCGCUGGU--CGAgc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 34507 | 0.73 | 0.131141 |
Target: 5'- cGGCGGaccuucGGCACCAGgGCG-CCAcGCUCGg -3' miRNA: 3'- -UCGUC------CUGUGGUCgCGCuGGU-CGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 33801 | 0.67 | 0.337601 |
Target: 5'- uGGCGauGGC-CCGGCGCGucagcuugaaggugGCCAGCUUGg -3' miRNA: 3'- -UCGUc-CUGuGGUCGCGC--------------UGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 33186 | 0.66 | 0.374264 |
Target: 5'- gGGUcGcGGCGCU-GCGCGACCGgaguuGCUCGg -3' miRNA: 3'- -UCGuC-CUGUGGuCGCGCUGGU-----CGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 33061 | 0.73 | 0.121895 |
Target: 5'- cGGCAGGugGCCAacuGCggguuuauccggguuGCGACgGGCUCGc -3' miRNA: 3'- -UCGUCCugUGGU---CG---------------CGCUGgUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 33034 | 0.68 | 0.278663 |
Target: 5'- gGGCAGGcCggagcguuGCC-GCuCGGCCAGCUCGc -3' miRNA: 3'- -UCGUCCuG--------UGGuCGcGCUGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 32610 | 0.66 | 0.374264 |
Target: 5'- cAGCGGGcgGCC-GCugGCGGCCAGUUCc -3' miRNA: 3'- -UCGUCCugUGGuCG--CGCUGGUCGAGc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 32562 | 0.66 | 0.374264 |
Target: 5'- cAGCucGACcugGCCAGCgGCGACCAGgUgGu -3' miRNA: 3'- -UCGucCUG---UGGUCG-CGCUGGUCgAgC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 31455 | 0.66 | 0.35688 |
Target: 5'- -cCAGGA-ACC-GCugGCGGCCGGCUCGc -3' miRNA: 3'- ucGUCCUgUGGuCG--CGCUGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 30758 | 0.66 | 0.365501 |
Target: 5'- cAGCAGGGCAUCA-C-CGACCAGgaUCa -3' miRNA: 3'- -UCGUCCUGUGGUcGcGCUGGUCg-AGc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 30638 | 0.69 | 0.238645 |
Target: 5'- uGCGGGcCACCucAGCgGCGAgCAGCUgGa -3' miRNA: 3'- uCGUCCuGUGG--UCG-CGCUgGUCGAgC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 30587 | 0.71 | 0.16199 |
Target: 5'- cGGCAGcGACACCuGGCGCGuguacccgcugcuCCAGCgCGg -3' miRNA: 3'- -UCGUC-CUGUGG-UCGCGCu------------GGUCGaGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 30494 | 0.73 | 0.120527 |
Target: 5'- gGGCcGGGCACucaaugcggcuCAGCGCGGCCAggacacgacGCUCGa -3' miRNA: 3'- -UCGuCCUGUG-----------GUCGCGCUGGU---------CGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 29811 | 0.66 | 0.354322 |
Target: 5'- uGgAGGAcCGCCAgGCGCuucuucaggucuucGGCCGGCUCc -3' miRNA: 3'- uCgUCCU-GUGGU-CGCG--------------CUGGUCGAGc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 28947 | 0.68 | 0.299096 |
Target: 5'- uGGCcGGAgACUuccggcgAGCGCGuggugcaguugggGCCGGCUCGg -3' miRNA: 3'- -UCGuCCUgUGG-------UCGCGC-------------UGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 28495 | 0.68 | 0.300599 |
Target: 5'- aGGCcGGugACCgcgAGCGCGGCgCGGCa-- -3' miRNA: 3'- -UCGuCCugUGG---UCGCGCUG-GUCGagc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 27872 | 0.73 | 0.131141 |
Target: 5'- gAGCaAGGugACC-GCcuCGGCCGGCUCGg -3' miRNA: 3'- -UCG-UCCugUGGuCGc-GCUGGUCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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