miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23145 3' -59.4 NC_005178.1 + 37529 0.67 0.348404
Target:  5'- cGGgAGGGCAUCGGCaaGCuGACC-GCUCu -3'
miRNA:   3'- -UCgUCCUGUGGUCG--CG-CUGGuCGAGc -5'
23145 3' -59.4 NC_005178.1 + 37024 0.69 0.256026
Target:  5'- cGCAGGGCACgguuccuggaccgaCGGCGCcACCGuGCUUGu -3'
miRNA:   3'- uCGUCCUGUG--------------GUCGCGcUGGU-CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 36477 0.69 0.249471
Target:  5'- cGGCGGGACggcgggcaacaucaACCAGCGCGuCCAagauuuGCUa- -3'
miRNA:   3'- -UCGUCCUG--------------UGGUCGCGCuGGU------CGAgc -5'
23145 3' -59.4 NC_005178.1 + 36073 0.66 0.35688
Target:  5'- uGguGGGCaACgGGUGCGACCAcgGCUa- -3'
miRNA:   3'- uCguCCUG-UGgUCGCGCUGGU--CGAgc -5'
23145 3' -59.4 NC_005178.1 + 34507 0.73 0.131141
Target:  5'- cGGCGGaccuucGGCACCAGgGCG-CCAcGCUCGg -3'
miRNA:   3'- -UCGUC------CUGUGGUCgCGCuGGU-CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 33801 0.67 0.337601
Target:  5'- uGGCGauGGC-CCGGCGCGucagcuugaaggugGCCAGCUUGg -3'
miRNA:   3'- -UCGUc-CUGuGGUCGCGC--------------UGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 33186 0.66 0.374264
Target:  5'- gGGUcGcGGCGCU-GCGCGACCGgaguuGCUCGg -3'
miRNA:   3'- -UCGuC-CUGUGGuCGCGCUGGU-----CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 33061 0.73 0.121895
Target:  5'- cGGCAGGugGCCAacuGCggguuuauccggguuGCGACgGGCUCGc -3'
miRNA:   3'- -UCGUCCugUGGU---CG---------------CGCUGgUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 33034 0.68 0.278663
Target:  5'- gGGCAGGcCggagcguuGCC-GCuCGGCCAGCUCGc -3'
miRNA:   3'- -UCGUCCuG--------UGGuCGcGCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 32610 0.66 0.374264
Target:  5'- cAGCGGGcgGCC-GCugGCGGCCAGUUCc -3'
miRNA:   3'- -UCGUCCugUGGuCG--CGCUGGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 32562 0.66 0.374264
Target:  5'- cAGCucGACcugGCCAGCgGCGACCAGgUgGu -3'
miRNA:   3'- -UCGucCUG---UGGUCG-CGCUGGUCgAgC- -5'
23145 3' -59.4 NC_005178.1 + 31455 0.66 0.35688
Target:  5'- -cCAGGA-ACC-GCugGCGGCCGGCUCGc -3'
miRNA:   3'- ucGUCCUgUGGuCG--CGCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 30758 0.66 0.365501
Target:  5'- cAGCAGGGCAUCA-C-CGACCAGgaUCa -3'
miRNA:   3'- -UCGUCCUGUGGUcGcGCUGGUCg-AGc -5'
23145 3' -59.4 NC_005178.1 + 30638 0.69 0.238645
Target:  5'- uGCGGGcCACCucAGCgGCGAgCAGCUgGa -3'
miRNA:   3'- uCGUCCuGUGG--UCG-CGCUgGUCGAgC- -5'
23145 3' -59.4 NC_005178.1 + 30587 0.71 0.16199
Target:  5'- cGGCAGcGACACCuGGCGCGuguacccgcugcuCCAGCgCGg -3'
miRNA:   3'- -UCGUC-CUGUGG-UCGCGCu------------GGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 30494 0.73 0.120527
Target:  5'- gGGCcGGGCACucaaugcggcuCAGCGCGGCCAggacacgacGCUCGa -3'
miRNA:   3'- -UCGuCCUGUG-----------GUCGCGCUGGU---------CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 29811 0.66 0.354322
Target:  5'- uGgAGGAcCGCCAgGCGCuucuucaggucuucGGCCGGCUCc -3'
miRNA:   3'- uCgUCCU-GUGGU-CGCG--------------CUGGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 28947 0.68 0.299096
Target:  5'- uGGCcGGAgACUuccggcgAGCGCGuggugcaguugggGCCGGCUCGg -3'
miRNA:   3'- -UCGuCCUgUGG-------UCGCGC-------------UGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 28495 0.68 0.300599
Target:  5'- aGGCcGGugACCgcgAGCGCGGCgCGGCa-- -3'
miRNA:   3'- -UCGuCCugUGG---UCGCGCUG-GUCGagc -5'
23145 3' -59.4 NC_005178.1 + 27872 0.73 0.131141
Target:  5'- gAGCaAGGugACC-GCcuCGGCCGGCUCGg -3'
miRNA:   3'- -UCG-UCCugUGGuCGc-GCUGGUCGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.