miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23145 3' -59.4 NC_005178.1 + 13312 0.67 0.348404
Target:  5'- gGGUcgaGGGGCGCCGggcugcucGCGCugucggugauGACCAGUUCGc -3'
miRNA:   3'- -UCG---UCCUGUGGU--------CGCG----------CUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 17328 0.67 0.348404
Target:  5'- cGGCGGGGC-CgAG-GuCGcCCAGCUCGg -3'
miRNA:   3'- -UCGUCCUGuGgUCgC-GCuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 37529 0.67 0.348404
Target:  5'- cGGgAGGGCAUCGGCaaGCuGACC-GCUCu -3'
miRNA:   3'- -UCgUCCUGUGGUCG--CG-CUGGuCGAGc -5'
23145 3' -59.4 NC_005178.1 + 13125 0.67 0.331886
Target:  5'- uGgAGGuGCuCCAGCGCcuGGCCAGCUUc -3'
miRNA:   3'- uCgUCC-UGuGGUCGCG--CUGGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 5341 0.68 0.271639
Target:  5'- gAGCuGuACACCGGUGCGGCCccgAGCcCGa -3'
miRNA:   3'- -UCGuCcUGUGGUCGCGCUGG---UCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 28495 0.68 0.300599
Target:  5'- aGGCcGGugACCgcgAGCGCGGCgCGGCa-- -3'
miRNA:   3'- -UCGuCCugUGG---UCGCGCUG-GUCGagc -5'
23145 3' -59.4 NC_005178.1 + 28947 0.68 0.299096
Target:  5'- uGGCcGGAgACUuccggcgAGCGCGuggugcaguugggGCCGGCUCGg -3'
miRNA:   3'- -UCGuCCUgUGG-------UCGCGC-------------UGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 19228 0.68 0.28583
Target:  5'- cGCGGucCACCAGCu---CCAGCUCGa -3'
miRNA:   3'- uCGUCcuGUGGUCGcgcuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 33034 0.68 0.278663
Target:  5'- gGGCAGGcCggagcguuGCC-GCuCGGCCAGCUCGc -3'
miRNA:   3'- -UCGUCCuG--------UGGuCGcGCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 26609 0.68 0.271639
Target:  5'- gGGCAGGAgGCgGGcCGCG-CCGGaUCGa -3'
miRNA:   3'- -UCGUCCUgUGgUC-GCGCuGGUCgAGC- -5'
23145 3' -59.4 NC_005178.1 + 22438 0.68 0.270945
Target:  5'- gGGCAGGuacuggacagcccGCcuugGCCgAGCGCuucACCAGCUCGg -3'
miRNA:   3'- -UCGUCC-------------UG----UGG-UCGCGc--UGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 2561 0.68 0.264759
Target:  5'- aGGCuGGuCggcgccucgGCCAGCGCGGCCAaguaggacgcGCUCa -3'
miRNA:   3'- -UCGuCCuG---------UGGUCGCGCUGGU----------CGAGc -5'
23145 3' -59.4 NC_005178.1 + 9363 0.68 0.264759
Target:  5'- cAGCAGu-CGCCAGgGCG-CCGGC-CGa -3'
miRNA:   3'- -UCGUCcuGUGGUCgCGCuGGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 25736 0.68 0.264759
Target:  5'- cGCGGu-CACCAGgGCGGCCAGggUGu -3'
miRNA:   3'- uCGUCcuGUGGUCgCGCUGGUCgaGC- -5'
23145 3' -59.4 NC_005178.1 + 27279 0.68 0.264759
Target:  5'- uGCucGACuaccACCAGCGUGGCCGGCa-- -3'
miRNA:   3'- uCGucCUG----UGGUCGCGCUGGUCGagc -5'
23145 3' -59.4 NC_005178.1 + 30638 0.69 0.238645
Target:  5'- uGCGGGcCACCucAGCgGCGAgCAGCUgGa -3'
miRNA:   3'- uCGUCCuGUGG--UCG-CGCUgGUCGAgC- -5'
23145 3' -59.4 NC_005178.1 + 1612 0.69 0.251423
Target:  5'- cGCAGGAagucaucCCAGCGCaacaugcgGAUCAGUUCGc -3'
miRNA:   3'- uCGUCCUgu-----GGUCGCG--------CUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 26949 0.69 0.244965
Target:  5'- aGGguGGAUugCuGCGguGCCGGCUCGc -3'
miRNA:   3'- -UCguCCUGugGuCGCgcUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 25242 0.69 0.232462
Target:  5'- cAGCAGGAaagcggcaGgCAGCGCGAucaCCAGCgguuUCGg -3'
miRNA:   3'- -UCGUCCUg-------UgGUCGCGCU---GGUCG----AGC- -5'
23145 3' -59.4 NC_005178.1 + 8659 0.69 0.226415
Target:  5'- cGUAGGccuGC-CCAGcCGCGACCAGgUCu -3'
miRNA:   3'- uCGUCC---UGuGGUC-GCGCUGGUCgAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.