miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23145 3' -59.4 NC_005178.1 + 14853 0.75 0.085597
Target:  5'- cGGCAGcGAC-CCGGCGau-CCAGCUCGg -3'
miRNA:   3'- -UCGUC-CUGuGGUCGCgcuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 17078 0.66 0.35688
Target:  5'- cAGCuGGGCGguggCGGCgGCGAUCuGCUCGa -3'
miRNA:   3'- -UCGuCCUGUg---GUCG-CGCUGGuCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 17328 0.67 0.348404
Target:  5'- cGGCGGGGC-CgAG-GuCGcCCAGCUCGg -3'
miRNA:   3'- -UCGUCCUGuGgUCgC-GCuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 17597 0.67 0.323845
Target:  5'- gGGC-GGAguCUuGCGCGACCGugcgcGCUCGa -3'
miRNA:   3'- -UCGuCCUguGGuCGCGCUGGU-----CGAGC- -5'
23145 3' -59.4 NC_005178.1 + 19228 0.68 0.28583
Target:  5'- cGCGGucCACCAGCu---CCAGCUCGa -3'
miRNA:   3'- uCGUCcuGUGGUCGcgcuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 19477 0.7 0.192883
Target:  5'- cGGCAGGuuCGCCAGCugcucgcgaGCGACCGGgCUg- -3'
miRNA:   3'- -UCGUCCu-GUGGUCG---------CGCUGGUC-GAgc -5'
23145 3' -59.4 NC_005178.1 + 20828 0.7 0.203548
Target:  5'- cGCAGcGAUgcgaggACCAGgGCG-CCGGCUCa -3'
miRNA:   3'- uCGUC-CUG------UGGUCgCGCuGGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 22438 0.68 0.270945
Target:  5'- gGGCAGGuacuggacagcccGCcuugGCCgAGCGCuucACCAGCUCGg -3'
miRNA:   3'- -UCGUCC-------------UG----UGG-UCGCGc--UGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 23457 0.74 0.104596
Target:  5'- cGGcCAGGGCGcCCGGCGCGaaGCCGGCcCGc -3'
miRNA:   3'- -UC-GUCCUGU-GGUCGCGC--UGGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 24563 0.7 0.21415
Target:  5'- uGCuGGACACCAGCaagccggauaccgGCGACCugGGCcgcuUCGg -3'
miRNA:   3'- uCGuCCUGUGGUCG-------------CGCUGG--UCG----AGC- -5'
23145 3' -59.4 NC_005178.1 + 24881 0.7 0.218173
Target:  5'- cGCAGGcaaccaggccaccCGCCAGCGCG-CCGGC-CGc -3'
miRNA:   3'- uCGUCCu------------GUGGUCGCGCuGGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 25068 1.09 0.000217
Target:  5'- cAGCAGGACACCAGCGCGACCAGCUCGg -3'
miRNA:   3'- -UCGUCCUGUGGUCGCGCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 25242 0.69 0.232462
Target:  5'- cAGCAGGAaagcggcaGgCAGCGCGAucaCCAGCgguuUCGg -3'
miRNA:   3'- -UCGUCCUg-------UgGUCGCGCU---GGUCG----AGC- -5'
23145 3' -59.4 NC_005178.1 + 25525 0.67 0.31595
Target:  5'- uGGCAGGaaaGCGCCcguGCGCaAUCGGCgUCGa -3'
miRNA:   3'- -UCGUCC---UGUGGu--CGCGcUGGUCG-AGC- -5'
23145 3' -59.4 NC_005178.1 + 25736 0.68 0.264759
Target:  5'- cGCGGu-CACCAGgGCGGCCAGggUGu -3'
miRNA:   3'- uCGUCcuGUGGUCgCGCUGGUCgaGC- -5'
23145 3' -59.4 NC_005178.1 + 26609 0.68 0.271639
Target:  5'- gGGCAGGAgGCgGGcCGCG-CCGGaUCGa -3'
miRNA:   3'- -UCGUCCUgUGgUC-GCGCuGGUCgAGC- -5'
23145 3' -59.4 NC_005178.1 + 26906 0.67 0.331886
Target:  5'- cGCGGaGACGCCGGCcggggcguuGCGccCCGGCUUa -3'
miRNA:   3'- uCGUC-CUGUGGUCG---------CGCu-GGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 26949 0.69 0.244965
Target:  5'- aGGguGGAUugCuGCGguGCCGGCUCGc -3'
miRNA:   3'- -UCguCCUGugGuCGCgcUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 27279 0.68 0.264759
Target:  5'- uGCucGACuaccACCAGCGUGGCCGGCa-- -3'
miRNA:   3'- uCGucCUG----UGGUCGCGCUGGUCGagc -5'
23145 3' -59.4 NC_005178.1 + 27872 0.73 0.131141
Target:  5'- gAGCaAGGugACC-GCcuCGGCCGGCUCGg -3'
miRNA:   3'- -UCG-UCCugUGGuCGc-GCUGGUCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.