miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23147 5' -54.6 NC_005178.1 + 25785 1.09 0.000696
Target:  5'- uACGACCUACAACGCCAAGCUCCAGGAg -3'
miRNA:   3'- -UGCUGGAUGUUGCGGUUCGAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 37121 0.81 0.075546
Target:  5'- gACGACCU-CcuCGCCGAGgUCCAGGAg -3'
miRNA:   3'- -UGCUGGAuGuuGCGGUUCgAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 14270 0.79 0.101648
Target:  5'- uACGGCgaACGAUGCCAAGgUCCAGGu -3'
miRNA:   3'- -UGCUGgaUGUUGCGGUUCgAGGUCCu -5'
23147 5' -54.6 NC_005178.1 + 25348 0.76 0.175932
Target:  5'- gGCGACCaUGCca-GCCAGGCUggCCGGGAg -3'
miRNA:   3'- -UGCUGG-AUGuugCGGUUCGA--GGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 11850 0.74 0.223996
Target:  5'- cACGAaaacgggcagcagcCCUACAGCGCCGAGCagaucgcCCAGGc -3'
miRNA:   3'- -UGCU--------------GGAUGUUGCGGUUCGa------GGUCCu -5'
23147 5' -54.6 NC_005178.1 + 15661 0.73 0.251638
Target:  5'- cACGuCUUcCAGCGCCGGGCcgaCCAGGAg -3'
miRNA:   3'- -UGCuGGAuGUUGCGGUUCGa--GGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 20612 0.73 0.272544
Target:  5'- gACGGCCUgaucaACAGCGCUA---UCCAGGAg -3'
miRNA:   3'- -UGCUGGA-----UGUUGCGGUucgAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 17398 0.73 0.275435
Target:  5'- uCGGCCUACAugGCCGGGCgcuaugCCgccgcauacgaggccAGGGa -3'
miRNA:   3'- uGCUGGAUGUugCGGUUCGa-----GG---------------UCCU- -5'
23147 5' -54.6 NC_005178.1 + 28566 0.72 0.287243
Target:  5'- gACG-UCUACGGCGCCGuAGCucugUCCGGGGu -3'
miRNA:   3'- -UGCuGGAUGUUGCGGU-UCG----AGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 27460 0.72 0.294823
Target:  5'- uCGACCUGgAACaugcgccggGCCAuauggucggcguAGCUCCAGGGg -3'
miRNA:   3'- uGCUGGAUgUUG---------CGGU------------UCGAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 2565 0.72 0.302558
Target:  5'- --uGCCUACAAagcugGCCGGGCUuCCAGGGc -3'
miRNA:   3'- ugcUGGAUGUUg----CGGUUCGA-GGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 3337 0.72 0.302558
Target:  5'- gACGGCCacacguuCGACGCCGAGgUCCAGc- -3'
miRNA:   3'- -UGCUGGau-----GUUGCGGUUCgAGGUCcu -5'
23147 5' -54.6 NC_005178.1 + 16735 0.72 0.310448
Target:  5'- uUGAUCUGCAugGCCGAGCaaaccgCgAGGGc -3'
miRNA:   3'- uGCUGGAUGUugCGGUUCGa-----GgUCCU- -5'
23147 5' -54.6 NC_005178.1 + 20904 0.71 0.318494
Target:  5'- cCGACC-GCAACaCCccGCUCCAGGAc -3'
miRNA:   3'- uGCUGGaUGUUGcGGuuCGAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 13449 0.71 0.318494
Target:  5'- cACGACCuUGCcauagaggguaAGCGCCAGGUugUCCGGGc -3'
miRNA:   3'- -UGCUGG-AUG-----------UUGCGGUUCG--AGGUCCu -5'
23147 5' -54.6 NC_005178.1 + 17170 0.71 0.335053
Target:  5'- gUGGCCaagGCGucACGCCuggauguGCUCCAGGAc -3'
miRNA:   3'- uGCUGGa--UGU--UGCGGuu-----CGAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 35703 0.71 0.352233
Target:  5'- cUGGCCgaggACAugGCgGAugguccGCUCCAGGAc -3'
miRNA:   3'- uGCUGGa---UGUugCGgUU------CGAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 27599 0.71 0.352233
Target:  5'- -aGGCCUACAGCGaCGcGCUCCAGc- -3'
miRNA:   3'- ugCUGGAUGUUGCgGUuCGAGGUCcu -5'
23147 5' -54.6 NC_005178.1 + 7736 0.71 0.361053
Target:  5'- -aGACCUGaagaAGCGCCuGGCgguccUCCAGGGc -3'
miRNA:   3'- ugCUGGAUg---UUGCGGuUCG-----AGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 753 0.7 0.407416
Target:  5'- cCGACCUGCuuCGCCAAuGCUCgCcGGc -3'
miRNA:   3'- uGCUGGAUGuuGCGGUU-CGAG-GuCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.