miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23147 5' -54.6 NC_005178.1 + 412 0.68 0.510344
Target:  5'- -aGGCCUgGCGGCGU--AGCUCCuGGAc -3'
miRNA:   3'- ugCUGGA-UGUUGCGguUCGAGGuCCU- -5'
23147 5' -54.6 NC_005178.1 + 753 0.7 0.407416
Target:  5'- cCGACCUGCuuCGCCAAuGCUCgCcGGc -3'
miRNA:   3'- uGCUGGAUGuuGCGGUU-CGAG-GuCCu -5'
23147 5' -54.6 NC_005178.1 + 1126 0.67 0.565749
Target:  5'- cGCGGCa-AUAGCccGCCAacuggguguuAGCUCCAGGGc -3'
miRNA:   3'- -UGCUGgaUGUUG--CGGU----------UCGAGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 1936 0.67 0.565749
Target:  5'- -aGACCUGgAGCGUCAccgucgccccAGCUuCCGGGc -3'
miRNA:   3'- ugCUGGAUgUUGCGGU----------UCGA-GGUCCu -5'
23147 5' -54.6 NC_005178.1 + 2565 0.72 0.302558
Target:  5'- --uGCCUACAAagcugGCCGGGCUuCCAGGGc -3'
miRNA:   3'- ugcUGGAUGUUg----CGGUUCGA-GGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 2576 0.67 0.584968
Target:  5'- uCGGCCaGCGcgGCCAAGUaggacgcgcucacgUCCAGGAg -3'
miRNA:   3'- uGCUGGaUGUugCGGUUCG--------------AGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 3337 0.72 0.302558
Target:  5'- gACGGCCacacguuCGACGCCGAGgUCCAGc- -3'
miRNA:   3'- -UGCUGGau-----GUUGCGGUUCgAGGUCcu -5'
23147 5' -54.6 NC_005178.1 + 4287 0.68 0.478199
Target:  5'- uGCGGCUU-CGGCGCCAAGaccuuggaCAGGAu -3'
miRNA:   3'- -UGCUGGAuGUUGCGGUUCgag-----GUCCU- -5'
23147 5' -54.6 NC_005178.1 + 5650 0.67 0.572515
Target:  5'- gAUGACCgGCAGCGCCAucccGGCgacgucggucacgCgGGGAa -3'
miRNA:   3'- -UGCUGGaUGUUGCGGU----UCGa------------GgUCCU- -5'
23147 5' -54.6 NC_005178.1 + 6985 0.68 0.499524
Target:  5'- uGCGACCaccaACGgauCGCCAGGCgCgAGGAa -3'
miRNA:   3'- -UGCUGGa---UGUu--GCGGUUCGaGgUCCU- -5'
23147 5' -54.6 NC_005178.1 + 7284 0.69 0.467706
Target:  5'- uGCGcACCUucaACGACGCCGcccggcuGCUCCAGc- -3'
miRNA:   3'- -UGC-UGGA---UGUUGCGGUu------CGAGGUCcu -5'
23147 5' -54.6 NC_005178.1 + 7647 0.66 0.59975
Target:  5'- gGCGACCUcCAGCGC-GAGCUggcCCGucuGGAa -3'
miRNA:   3'- -UGCUGGAuGUUGCGgUUCGA---GGU---CCU- -5'
23147 5' -54.6 NC_005178.1 + 7736 0.71 0.361053
Target:  5'- -aGACCUGaagaAGCGCCuGGCgguccUCCAGGGc -3'
miRNA:   3'- ugCUGGAUg---UUGCGGuUCG-----AGGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 9322 0.69 0.447083
Target:  5'- aGCGGCCUggauagcgGCGGCGCC--GCU-CAGGAg -3'
miRNA:   3'- -UGCUGGA--------UGUUGCGGuuCGAgGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 9521 0.67 0.588373
Target:  5'- -aGACCgcCAGCGCCGccuGGCg-CGGGAa -3'
miRNA:   3'- ugCUGGauGUUGCGGU---UCGagGUCCU- -5'
23147 5' -54.6 NC_005178.1 + 9659 0.69 0.457332
Target:  5'- cGCGGCCggugGCuuCGCCGAGCcggCCgAGGc -3'
miRNA:   3'- -UGCUGGa---UGuuGCGGUUCGa--GG-UCCu -5'
23147 5' -54.6 NC_005178.1 + 11850 0.74 0.223996
Target:  5'- cACGAaaacgggcagcagcCCUACAGCGCCGAGCagaucgcCCAGGc -3'
miRNA:   3'- -UGCU--------------GGAUGUUGCGGUUCGa------GGUCCu -5'
23147 5' -54.6 NC_005178.1 + 13268 0.69 0.417126
Target:  5'- -gGACCUcGCcguaGGCGCCAucGGCUCgCAGGGc -3'
miRNA:   3'- ugCUGGA-UG----UUGCGGU--UCGAG-GUCCU- -5'
23147 5' -54.6 NC_005178.1 + 13449 0.71 0.318494
Target:  5'- cACGACCuUGCcauagaggguaAGCGCCAGGUugUCCGGGc -3'
miRNA:   3'- -UGCUGG-AUG-----------UUGCGGUUCG--AGGUCCu -5'
23147 5' -54.6 NC_005178.1 + 14270 0.79 0.101648
Target:  5'- uACGGCgaACGAUGCCAAGgUCCAGGu -3'
miRNA:   3'- -UGCUGgaUGUUGCGGUUCgAGGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.