miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23149 3' -60.5 NC_005178.1 + 16548 0.74 0.100393
Target:  5'- gACCucaaggaCCGGGCcgacCUGgCCGCCAUGGCa -3'
miRNA:   3'- -UGGc------GGCCCGuu--GACaGGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 17595 0.66 0.348767
Target:  5'- uCCGuuGacGGCGgccGCUGUgcgUCGCCGUGGUc -3'
miRNA:   3'- uGGCggC--CCGU---UGACA---GGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 17630 0.66 0.348767
Target:  5'- cACUGCgGcGGC-ACUGgcggcaucgaUCCGCCAgcccGGCa -3'
miRNA:   3'- -UGGCGgC-CCGuUGAC----------AGGCGGUa---CCG- -5'
23149 3' -60.5 NC_005178.1 + 18090 0.66 0.324453
Target:  5'- aACCuGCCGcaGCGcCUGgcccagcCCGCCAUGGUg -3'
miRNA:   3'- -UGG-CGGCc-CGUuGACa------GGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 19740 0.66 0.357156
Target:  5'- aACCGCCGcGCucGACcGUcgCCaCCAUGGCg -3'
miRNA:   3'- -UGGCGGCcCG--UUGaCA--GGcGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 20219 0.7 0.189307
Target:  5'- uGCCgaGCUGGGCGACcucgGccCCGCCGUccGGCg -3'
miRNA:   3'- -UGG--CGGCCCGUUGa---Ca-GGCGGUA--CCG- -5'
23149 3' -60.5 NC_005178.1 + 20607 0.66 0.357156
Target:  5'- aACCGauggaGGGCA----UCCGCCAgGGCg -3'
miRNA:   3'- -UGGCgg---CCCGUugacAGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 20982 0.67 0.272708
Target:  5'- cAUCGUCGuGGCgAACgcuaccggGUUCGCCGUGGg -3'
miRNA:   3'- -UGGCGGC-CCG-UUGa-------CAGGCGGUACCg -5'
23149 3' -60.5 NC_005178.1 + 22264 0.7 0.169974
Target:  5'- gACCGCCaGGCug--GcCCGCCA-GGCg -3'
miRNA:   3'- -UGGCGGcCCGuugaCaGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 22430 0.73 0.106215
Target:  5'- gAUCGCuCGGGCAgguACUGgacagcCCGCCuUGGCc -3'
miRNA:   3'- -UGGCG-GCCCGU---UGACa-----GGCGGuACCG- -5'
23149 3' -60.5 NC_005178.1 + 22705 0.69 0.210547
Target:  5'- gAUCGCCGGGUcGCUG-CCgaguGCCAUaGCg -3'
miRNA:   3'- -UGGCGGCCCGuUGACaGG----CGGUAcCG- -5'
23149 3' -60.5 NC_005178.1 + 23547 0.66 0.324453
Target:  5'- gGCCGuCCGGGUg---GUCCaccaGCUcgGGCa -3'
miRNA:   3'- -UGGC-GGCCCGuugaCAGG----CGGuaCCG- -5'
23149 3' -60.5 NC_005178.1 + 23756 0.66 0.34052
Target:  5'- --aGCUGGGCAAUa-UCCGCCAggaagucucUGGUg -3'
miRNA:   3'- uggCGGCCCGUUGacAGGCGGU---------ACCG- -5'
23149 3' -60.5 NC_005178.1 + 24163 0.66 0.357156
Target:  5'- cCCGCCGaccuGGUGGCUGgcgaugugaUCCGCU-UGGCc -3'
miRNA:   3'- uGGCGGC----CCGUUGAC---------AGGCGGuACCG- -5'
23149 3' -60.5 NC_005178.1 + 24961 0.66 0.346278
Target:  5'- uCUGgUGGGCAGCcaaccaggguuuuuUcGUCCGCCgccuGUGGCg -3'
miRNA:   3'- uGGCgGCCCGUUG--------------A-CAGGCGG----UACCG- -5'
23149 3' -60.5 NC_005178.1 + 25365 0.67 0.301423
Target:  5'- gGCUgGCCGGG-AGCUGUCCGgUuUGGg -3'
miRNA:   3'- -UGG-CGGCCCgUUGACAGGCgGuACCg -5'
23149 3' -60.5 NC_005178.1 + 25819 0.69 0.199682
Target:  5'- gACCGCCugcucGGCAcguCUGa-CGCCAUGGCc -3'
miRNA:   3'- -UGGCGGc----CCGUu--GACagGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 26294 1.11 0.000126
Target:  5'- cACCGCCGGGCAACUGUCCGCCAUGGCg -3'
miRNA:   3'- -UGGCGGCCCGUUGACAGGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 27879 0.7 0.169974
Target:  5'- gGCCGCCcaGGGCAACUGg--GUCAacggGGCg -3'
miRNA:   3'- -UGGCGG--CCCGUUGACaggCGGUa---CCG- -5'
23149 3' -60.5 NC_005178.1 + 28232 0.73 0.11849
Target:  5'- cGCCGCCGcuauccaGGCcGCUG-CCGCCucgcUGGCc -3'
miRNA:   3'- -UGGCGGC-------CCGuUGACaGGCGGu---ACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.