Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23149 | 3' | -60.5 | NC_005178.1 | + | 1229 | 0.7 | 0.196518 |
Target: 5'- cGCUGUCGGGCAucagauugagaaACggcaugccguugagGUCUGCCAcGGCa -3' miRNA: 3'- -UGGCGGCCCGU------------UGa-------------CAGGCGGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 2189 | 0.68 | 0.233809 |
Target: 5'- aGCaGCCGGGCcuggAGC-GUCaCGCCcUGGCu -3' miRNA: 3'- -UGgCGGCCCG----UUGaCAG-GCGGuACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 2446 | 0.71 | 0.144282 |
Target: 5'- gGCCGCCaGcGGCAGCUcggcggcgaguaGUCCGgUcgGGCa -3' miRNA: 3'- -UGGCGG-C-CCGUUGA------------CAGGCgGuaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 2731 | 0.74 | 0.099546 |
Target: 5'- cGCCGCCcuGGGCGagguggccaccaagGCgGUCCGCCAggagacgcagcUGGCc -3' miRNA: 3'- -UGGCGG--CCCGU--------------UGaCAGGCGGU-----------ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 2798 | 0.68 | 0.239952 |
Target: 5'- aACCGCCa-GCAACUGgucgccgaugcCCGCCAgggGGUg -3' miRNA: 3'- -UGGCGGccCGUUGACa----------GGCGGUa--CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 3644 | 0.7 | 0.174635 |
Target: 5'- gGCCGCCGaGCAuCg--CCGCCA-GGCg -3' miRNA: 3'- -UGGCGGCcCGUuGacaGGCGGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 4930 | 0.7 | 0.17941 |
Target: 5'- gAUCGCCGaGG-AACUGgCCGCCAgcGGCc -3' miRNA: 3'- -UGGCGGC-CCgUUGACaGGCGGUa-CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 6443 | 0.66 | 0.332415 |
Target: 5'- gGCCGUCGGuGCcgauGCUGaCCGuCCA-GGUg -3' miRNA: 3'- -UGGCGGCC-CGu---UGACaGGC-GGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 10227 | 0.69 | 0.210547 |
Target: 5'- uGCUGCCGGau-ACcGUCCGCgaCAUGGCc -3' miRNA: 3'- -UGGCGGCCcguUGaCAGGCG--GUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 10348 | 0.67 | 0.272708 |
Target: 5'- aGCgCGCCGGGCugcGCUGgCCgaGCUGgugGGCa -3' miRNA: 3'- -UG-GCGGCCCGu--UGACaGG--CGGUa--CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 11234 | 0.76 | 0.065442 |
Target: 5'- uUCGCCcuGGCGAgUGacgCCGCCAUGGCg -3' miRNA: 3'- uGGCGGc-CCGUUgACa--GGCGGUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 11460 | 0.73 | 0.109244 |
Target: 5'- -aCGCUGcGGCAGC-GUCCGCCccucgGGCg -3' miRNA: 3'- ugGCGGC-CCGUUGaCAGGCGGua---CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 11670 | 0.71 | 0.165425 |
Target: 5'- -gCGCC-GGCAACUG-CCGC-AUGGCc -3' miRNA: 3'- ugGCGGcCCGUUGACaGGCGgUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 12051 | 0.68 | 0.265881 |
Target: 5'- uCCGCU-GGUGGCUGcCCGC-GUGGCg -3' miRNA: 3'- uGGCGGcCCGUUGACaGGCGgUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 13019 | 0.66 | 0.357156 |
Target: 5'- cCCGCCgugaaGGuGCAGCUGcUgGCCAgccUGGCc -3' miRNA: 3'- uGGCGG-----CC-CGUUGACaGgCGGU---ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 13152 | 0.68 | 0.24623 |
Target: 5'- -gCGCaGGGCAACgGUCgGCUgcGGCg -3' miRNA: 3'- ugGCGgCCCGUUGaCAGgCGGuaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 14100 | 0.7 | 0.194434 |
Target: 5'- -gCGCCGGGCGccCUGgccgUCGCCcugGGCg -3' miRNA: 3'- ugGCGGCCCGUu-GACa---GGCGGua-CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 15265 | 0.67 | 0.272708 |
Target: 5'- uCUGCUGGGCuuCaucGcCCGCCGccUGGCg -3' miRNA: 3'- uGGCGGCCCGuuGa--CaGGCGGU--ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 16331 | 0.74 | 0.094873 |
Target: 5'- gGCCgGCCGGGgAGCggguuucgGUgCCGuCCGUGGCg -3' miRNA: 3'- -UGG-CGGCCCgUUGa-------CA-GGC-GGUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 16538 | 0.67 | 0.286783 |
Target: 5'- gGCCGgUGGcGguGCUG-CCGCCcacGGCg -3' miRNA: 3'- -UGGCgGCC-CguUGACaGGCGGua-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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