Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23149 | 3' | -60.5 | NC_005178.1 | + | 24961 | 0.66 | 0.346278 |
Target: 5'- uCUGgUGGGCAGCcaaccaggguuuuuUcGUCCGCCgccuGUGGCg -3' miRNA: 3'- uGGCgGCCCGUUG--------------A-CAGGCGG----UACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 36068 | 0.67 | 0.272708 |
Target: 5'- cCCGCUgguGGGCAACggGUgCGaCCAcGGCu -3' miRNA: 3'- uGGCGG---CCCGUUGa-CAgGC-GGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 10348 | 0.67 | 0.272708 |
Target: 5'- aGCgCGCCGGGCugcGCUGgCCgaGCUGgugGGCa -3' miRNA: 3'- -UG-GCGGCCCGu--UGACaGG--CGGUa--CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 20982 | 0.67 | 0.272708 |
Target: 5'- cAUCGUCGuGGCgAACgcuaccggGUUCGCCGUGGg -3' miRNA: 3'- -UGGCGGC-CCG-UUGa-------CAGGCGGUACCg -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 31587 | 0.67 | 0.279675 |
Target: 5'- gACCGCCGccGGCcugGACcugGUCCGCCccguccaGGCc -3' miRNA: 3'- -UGGCGGC--CCG---UUGa--CAGGCGGua-----CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 25365 | 0.67 | 0.301423 |
Target: 5'- gGCUgGCCGGG-AGCUGUCCGgUuUGGg -3' miRNA: 3'- -UGG-CGGCCCgUUGACAGGCgGuACCg -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 28307 | 0.67 | 0.301423 |
Target: 5'- aGCUGCCgGGGCcGCUGgagUgGCUgGUGGCg -3' miRNA: 3'- -UGGCGG-CCCGuUGACa--GgCGG-UACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 18090 | 0.66 | 0.324453 |
Target: 5'- aACCuGCCGcaGCGcCUGgcccagcCCGCCAUGGUg -3' miRNA: 3'- -UGG-CGGCc-CGUuGACa------GGCGGUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 35156 | 0.66 | 0.324453 |
Target: 5'- cGCCaGCCGGcuggaggacGUcACUGUCgGCCA-GGCc -3' miRNA: 3'- -UGG-CGGCC---------CGuUGACAGgCGGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 2798 | 0.68 | 0.239952 |
Target: 5'- aACCGCCa-GCAACUGgucgccgaugcCCGCCAgggGGUg -3' miRNA: 3'- -UGGCGGccCGUUGACa----------GGCGGUa--CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 22705 | 0.69 | 0.210547 |
Target: 5'- gAUCGCCGGGUcGCUG-CCgaguGCCAUaGCg -3' miRNA: 3'- -UGGCGGCCCGuUGACaGG----CGGUAcCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 10227 | 0.69 | 0.210547 |
Target: 5'- uGCUGCCGGau-ACcGUCCGCgaCAUGGCc -3' miRNA: 3'- -UGGCGGCCcguUGaCAGGCG--GUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 32420 | 0.75 | 0.084684 |
Target: 5'- gGCaGCCGGuGCGGCUGUaucaguucaGCCGUGGCg -3' miRNA: 3'- -UGgCGGCC-CGUUGACAgg-------CGGUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 2731 | 0.74 | 0.099546 |
Target: 5'- cGCCGCCcuGGGCGagguggccaccaagGCgGUCCGCCAggagacgcagcUGGCc -3' miRNA: 3'- -UGGCGG--CCCGU--------------UGaCAGGCGGU-----------ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 16548 | 0.74 | 0.100393 |
Target: 5'- gACCucaaggaCCGGGCcgacCUGgCCGCCAUGGCa -3' miRNA: 3'- -UGGc------GGCCCGuu--GACaGGCGGUACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 28232 | 0.73 | 0.11849 |
Target: 5'- cGCCGCCGcuauccaGGCcGCUG-CCGCCucgcUGGCc -3' miRNA: 3'- -UGGCGGC-------CCGuUGACaGGCGGu---ACCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 22264 | 0.7 | 0.169974 |
Target: 5'- gACCGCCaGGCug--GcCCGCCA-GGCg -3' miRNA: 3'- -UGGCGGcCCGuugaCaGGCGGUaCCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 27879 | 0.7 | 0.169974 |
Target: 5'- gGCCGCCcaGGGCAACUGg--GUCAacggGGCg -3' miRNA: 3'- -UGGCGG--CCCGUUGACaggCGGUa---CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 4930 | 0.7 | 0.17941 |
Target: 5'- gAUCGCCGaGG-AACUGgCCGCCAgcGGCc -3' miRNA: 3'- -UGGCGGC-CCgUUGACaGGCGGUa-CCG- -5' |
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23149 | 3' | -60.5 | NC_005178.1 | + | 25819 | 0.69 | 0.199682 |
Target: 5'- gACCGCCugcucGGCAcguCUGa-CGCCAUGGCc -3' miRNA: 3'- -UGGCGGc----CCGUu--GACagGCGGUACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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