miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23149 3' -60.5 NC_005178.1 + 11234 0.76 0.065442
Target:  5'- uUCGCCcuGGCGAgUGacgCCGCCAUGGCg -3'
miRNA:   3'- uGGCGGc-CCGUUgACa--GGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 33008 0.67 0.308957
Target:  5'- aACCaCUGGGCGGC-GUCCGgCucgaugGGCa -3'
miRNA:   3'- -UGGcGGCCCGUUGaCAGGCgGua----CCG- -5'
23149 3' -60.5 NC_005178.1 + 6443 0.66 0.332415
Target:  5'- gGCCGUCGGuGCcgauGCUGaCCGuCCA-GGUg -3'
miRNA:   3'- -UGGCGGCC-CGu---UGACaGGC-GGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 20607 0.66 0.357156
Target:  5'- aACCGauggaGGGCA----UCCGCCAgGGCg -3'
miRNA:   3'- -UGGCgg---CCCGUugacAGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 28734 0.73 0.112353
Target:  5'- cACgCGCCGGGCGACUuUCuUGCCGaccUGGUg -3'
miRNA:   3'- -UG-GCGGCCCGUUGAcAG-GCGGU---ACCG- -5'
23149 3' -60.5 NC_005178.1 + 2446 0.71 0.144282
Target:  5'- gGCCGCCaGcGGCAGCUcggcggcgaguaGUCCGgUcgGGCa -3'
miRNA:   3'- -UGGCGG-C-CCGUUGA------------CAGGCgGuaCCG- -5'
23149 3' -60.5 NC_005178.1 + 3644 0.7 0.174635
Target:  5'- gGCCGCCGaGCAuCg--CCGCCA-GGCg -3'
miRNA:   3'- -UGGCGGCcCGUuGacaGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 20219 0.7 0.189307
Target:  5'- uGCCgaGCUGGGCGACcucgGccCCGCCGUccGGCg -3'
miRNA:   3'- -UGG--CGGCCCGUUGa---Ca-GGCGGUA--CCG- -5'
23149 3' -60.5 NC_005178.1 + 2189 0.68 0.233809
Target:  5'- aGCaGCCGGGCcuggAGC-GUCaCGCCcUGGCu -3'
miRNA:   3'- -UGgCGGCCCG----UUGaCAG-GCGGuACCG- -5'
23149 3' -60.5 NC_005178.1 + 32873 0.67 0.308957
Target:  5'- uAUCGCaaaGGGCGAUguuggcgaUGUCgGCCAugccauUGGCc -3'
miRNA:   3'- -UGGCGg--CCCGUUG--------ACAGgCGGU------ACCG- -5'
23149 3' -60.5 NC_005178.1 + 12051 0.68 0.265881
Target:  5'- uCCGCU-GGUGGCUGcCCGC-GUGGCg -3'
miRNA:   3'- uGGCGGcCCGUUGACaGGCGgUACCG- -5'
23149 3' -60.5 NC_005178.1 + 1229 0.7 0.196518
Target:  5'- cGCUGUCGGGCAucagauugagaaACggcaugccguugagGUCUGCCAcGGCa -3'
miRNA:   3'- -UGGCGGCCCGU------------UGa-------------CAGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 16331 0.74 0.094873
Target:  5'- gGCCgGCCGGGgAGCggguuucgGUgCCGuCCGUGGCg -3'
miRNA:   3'- -UGG-CGGCCCgUUGa-------CA-GGC-GGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 15265 0.67 0.272708
Target:  5'- uCUGCUGGGCuuCaucGcCCGCCGccUGGCg -3'
miRNA:   3'- uGGCGGCCCGuuGa--CaGGCGGU--ACCG- -5'
23149 3' -60.5 NC_005178.1 + 22430 0.73 0.106215
Target:  5'- gAUCGCuCGGGCAgguACUGgacagcCCGCCuUGGCc -3'
miRNA:   3'- -UGGCG-GCCCGU---UGACa-----GGCGGuACCG- -5'
23149 3' -60.5 NC_005178.1 + 14100 0.7 0.194434
Target:  5'- -gCGCCGGGCGccCUGgccgUCGCCcugGGCg -3'
miRNA:   3'- ugGCGGCCCGUu-GACa---GGCGGua-CCG- -5'
23149 3' -60.5 NC_005178.1 + 16538 0.67 0.286783
Target:  5'- gGCCGgUGGcGguGCUG-CCGCCcacGGCg -3'
miRNA:   3'- -UGGCgGCC-CguUGACaGGCGGua-CCG- -5'
23149 3' -60.5 NC_005178.1 + 23547 0.66 0.324453
Target:  5'- gGCCGuCCGGGUg---GUCCaccaGCUcgGGCa -3'
miRNA:   3'- -UGGC-GGCCCGuugaCAGG----CGGuaCCG- -5'
23149 3' -60.5 NC_005178.1 + 11460 0.73 0.109244
Target:  5'- -aCGCUGcGGCAGC-GUCCGCCccucgGGCg -3'
miRNA:   3'- ugGCGGC-CCGUUGaCAGGCGGua---CCG- -5'
23149 3' -60.5 NC_005178.1 + 11670 0.71 0.165425
Target:  5'- -gCGCC-GGCAACUG-CCGC-AUGGCc -3'
miRNA:   3'- ugGCGGcCCGUUGACaGGCGgUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.