miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23149 3' -60.5 NC_005178.1 + 28232 0.73 0.11849
Target:  5'- cGCCGCCGcuauccaGGCcGCUG-CCGCCucgcUGGCc -3'
miRNA:   3'- -UGGCGGC-------CCGuUGACaGGCGGu---ACCG- -5'
23149 3' -60.5 NC_005178.1 + 28734 0.73 0.112353
Target:  5'- cACgCGCCGGGCGACUuUCuUGCCGaccUGGUg -3'
miRNA:   3'- -UG-GCGGCCCGUUGAcAG-GCGGU---ACCG- -5'
23149 3' -60.5 NC_005178.1 + 11460 0.73 0.109244
Target:  5'- -aCGCUGcGGCAGC-GUCCGCCccucgGGCg -3'
miRNA:   3'- ugGCGGC-CCGUUGaCAGGCGGua---CCG- -5'
23149 3' -60.5 NC_005178.1 + 22430 0.73 0.106215
Target:  5'- gAUCGCuCGGGCAgguACUGgacagcCCGCCuUGGCc -3'
miRNA:   3'- -UGGCG-GCCCGU---UGACa-----GGCGGuACCG- -5'
23149 3' -60.5 NC_005178.1 + 16548 0.74 0.100393
Target:  5'- gACCucaaggaCCGGGCcgacCUGgCCGCCAUGGCa -3'
miRNA:   3'- -UGGc------GGCCCGuu--GACaGGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 2731 0.74 0.099546
Target:  5'- cGCCGCCcuGGGCGagguggccaccaagGCgGUCCGCCAggagacgcagcUGGCc -3'
miRNA:   3'- -UGGCGG--CCCGU--------------UGaCAGGCGGU-----------ACCG- -5'
23149 3' -60.5 NC_005178.1 + 16331 0.74 0.094873
Target:  5'- gGCCgGCCGGGgAGCggguuucgGUgCCGuCCGUGGCg -3'
miRNA:   3'- -UGG-CGGCCCgUUGa-------CA-GGC-GGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 32420 0.75 0.084684
Target:  5'- gGCaGCCGGuGCGGCUGUaucaguucaGCCGUGGCg -3'
miRNA:   3'- -UGgCGGCC-CGUUGACAgg-------CGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 11234 0.76 0.065442
Target:  5'- uUCGCCcuGGCGAgUGacgCCGCCAUGGCg -3'
miRNA:   3'- uGGCGGc-CCGUUgACa--GGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 26294 1.11 0.000126
Target:  5'- cACCGCCGGGCAACUGUCCGCCAUGGCg -3'
miRNA:   3'- -UGGCGGCCCGUUGACAGGCGGUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.