miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23149 3' -60.5 NC_005178.1 + 20982 0.67 0.272708
Target:  5'- cAUCGUCGuGGCgAACgcuaccggGUUCGCCGUGGg -3'
miRNA:   3'- -UGGCGGC-CCG-UUGa-------CAGGCGGUACCg -5'
23149 3' -60.5 NC_005178.1 + 10348 0.67 0.272708
Target:  5'- aGCgCGCCGGGCugcGCUGgCCgaGCUGgugGGCa -3'
miRNA:   3'- -UG-GCGGCCCGu--UGACaGG--CGGUa--CCG- -5'
23149 3' -60.5 NC_005178.1 + 36068 0.67 0.272708
Target:  5'- cCCGCUgguGGGCAACggGUgCGaCCAcGGCu -3'
miRNA:   3'- uGGCGG---CCCGUUGa-CAgGC-GGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 15265 0.67 0.272708
Target:  5'- uCUGCUGGGCuuCaucGcCCGCCGccUGGCg -3'
miRNA:   3'- uGGCGGCCCGuuGa--CaGGCGGU--ACCG- -5'
23149 3' -60.5 NC_005178.1 + 12051 0.68 0.265881
Target:  5'- uCCGCU-GGUGGCUGcCCGC-GUGGCg -3'
miRNA:   3'- uGGCGGcCCGUUGACaGGCGgUACCG- -5'
23149 3' -60.5 NC_005178.1 + 13152 0.68 0.24623
Target:  5'- -gCGCaGGGCAACgGUCgGCUgcGGCg -3'
miRNA:   3'- ugGCGgCCCGUUGaCAGgCGGuaCCG- -5'
23149 3' -60.5 NC_005178.1 + 2798 0.68 0.239952
Target:  5'- aACCGCCa-GCAACUGgucgccgaugcCCGCCAgggGGUg -3'
miRNA:   3'- -UGGCGGccCGUUGACa----------GGCGGUa--CCG- -5'
23149 3' -60.5 NC_005178.1 + 2189 0.68 0.233809
Target:  5'- aGCaGCCGGGCcuggAGC-GUCaCGCCcUGGCu -3'
miRNA:   3'- -UGgCGGCCCG----UUGaCAG-GCGGuACCG- -5'
23149 3' -60.5 NC_005178.1 + 10227 0.69 0.210547
Target:  5'- uGCUGCCGGau-ACcGUCCGCgaCAUGGCc -3'
miRNA:   3'- -UGGCGGCCcguUGaCAGGCG--GUACCG- -5'
23149 3' -60.5 NC_005178.1 + 22705 0.69 0.210547
Target:  5'- gAUCGCCGGGUcGCUG-CCgaguGCCAUaGCg -3'
miRNA:   3'- -UGGCGGCCCGuUGACaGG----CGGUAcCG- -5'
23149 3' -60.5 NC_005178.1 + 25819 0.69 0.199682
Target:  5'- gACCGCCugcucGGCAcguCUGa-CGCCAUGGCc -3'
miRNA:   3'- -UGGCGGc----CCGUu--GACagGCGGUACCG- -5'
23149 3' -60.5 NC_005178.1 + 1229 0.7 0.196518
Target:  5'- cGCUGUCGGGCAucagauugagaaACggcaugccguugagGUCUGCCAcGGCa -3'
miRNA:   3'- -UGGCGGCCCGU------------UGa-------------CAGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 14100 0.7 0.194434
Target:  5'- -gCGCCGGGCGccCUGgccgUCGCCcugGGCg -3'
miRNA:   3'- ugGCGGCCCGUu-GACa---GGCGGua-CCG- -5'
23149 3' -60.5 NC_005178.1 + 20219 0.7 0.189307
Target:  5'- uGCCgaGCUGGGCGACcucgGccCCGCCGUccGGCg -3'
miRNA:   3'- -UGG--CGGCCCGUUGa---Ca-GGCGGUA--CCG- -5'
23149 3' -60.5 NC_005178.1 + 4930 0.7 0.17941
Target:  5'- gAUCGCCGaGG-AACUGgCCGCCAgcGGCc -3'
miRNA:   3'- -UGGCGGC-CCgUUGACaGGCGGUa-CCG- -5'
23149 3' -60.5 NC_005178.1 + 3644 0.7 0.174635
Target:  5'- gGCCGCCGaGCAuCg--CCGCCA-GGCg -3'
miRNA:   3'- -UGGCGGCcCGUuGacaGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 27879 0.7 0.169974
Target:  5'- gGCCGCCcaGGGCAACUGg--GUCAacggGGCg -3'
miRNA:   3'- -UGGCGG--CCCGUUGACaggCGGUa---CCG- -5'
23149 3' -60.5 NC_005178.1 + 22264 0.7 0.169974
Target:  5'- gACCGCCaGGCug--GcCCGCCA-GGCg -3'
miRNA:   3'- -UGGCGGcCCGuugaCaGGCGGUaCCG- -5'
23149 3' -60.5 NC_005178.1 + 11670 0.71 0.165425
Target:  5'- -gCGCC-GGCAACUG-CCGC-AUGGCc -3'
miRNA:   3'- ugGCGGcCCGUUGACaGGCGgUACCG- -5'
23149 3' -60.5 NC_005178.1 + 2446 0.71 0.144282
Target:  5'- gGCCGCCaGcGGCAGCUcggcggcgaguaGUCCGgUcgGGCa -3'
miRNA:   3'- -UGGCGG-C-CCGUUGA------------CAGGCgGuaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.