miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 3' -57.5 NC_005178.1 + 25952 0.66 0.462945
Target:  5'- gAUGGuuGCCaUC---CAGCAAGGCGGg -3'
miRNA:   3'- -UAUCggCGGgAGcuaGUCGUUCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 17859 0.66 0.462945
Target:  5'- --uGCCGCCCUCG----GCGAGGUc- -3'
miRNA:   3'- uauCGGCGGGAGCuaguCGUUCCGcu -5'
23150 3' -57.5 NC_005178.1 + 28788 0.66 0.459868
Target:  5'- --cGCCGCCCgcacgcuggccaagUCGcccaCGGCAAgGGCGAa -3'
miRNA:   3'- uauCGGCGGG--------------AGCua--GUCGUU-CCGCU- -5'
23150 3' -57.5 NC_005178.1 + 16969 0.66 0.45273
Target:  5'- --cGCCGCCgUUGAggcgagaggUCAGCGccGCGAc -3'
miRNA:   3'- uauCGGCGGgAGCU---------AGUCGUucCGCU- -5'
23150 3' -57.5 NC_005178.1 + 30203 0.66 0.45273
Target:  5'- gAUGGUcacgCGcCCCUCuGUCGGCuccAGGCGAu -3'
miRNA:   3'- -UAUCG----GC-GGGAGcUAGUCGu--UCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 1473 0.66 0.45273
Target:  5'- --cGCCGCCCa-GGUCAGCGAacuGGUc- -3'
miRNA:   3'- uauCGGCGGGagCUAGUCGUU---CCGcu -5'
23150 3' -57.5 NC_005178.1 + 1550 0.66 0.44264
Target:  5'- --uGUCGCCCUCGGccuggccggaagUCGGCAGcguuGCGAc -3'
miRNA:   3'- uauCGGCGGGAGCU------------AGUCGUUc---CGCU- -5'
23150 3' -57.5 NC_005178.1 + 2160 0.66 0.44264
Target:  5'- -gGGCCaguugGCCCUCGcugguguucGUCAGCAgccGGGCc- -3'
miRNA:   3'- uaUCGG-----CGGGAGC---------UAGUCGU---UCCGcu -5'
23150 3' -57.5 NC_005178.1 + 33078 0.66 0.432677
Target:  5'- gGUAG-CGCUgggCgggagCGGUCGGCAGGGUGAa -3'
miRNA:   3'- -UAUCgGCGG---Ga----GCUAGUCGUUCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 2731 0.66 0.432677
Target:  5'- --cGCCGCCCUgggCGAgguggcCAcCAAGGCGGu -3'
miRNA:   3'- uauCGGCGGGA---GCUa-----GUcGUUCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 18067 0.66 0.413151
Target:  5'- -cGGUCGCUCgCGAgCAGCu-GGCGAa -3'
miRNA:   3'- uaUCGGCGGGaGCUaGUCGuuCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 28263 0.67 0.394178
Target:  5'- cUGGCCGCCgccaaUgGuGUCAGUggGGUGAc -3'
miRNA:   3'- uAUCGGCGGg----AgC-UAGUCGuuCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 10769 0.67 0.375779
Target:  5'- -aGGCCuGcCCCUUGGUCAGUugcuccAGGCGu -3'
miRNA:   3'- uaUCGG-C-GGGAGCUAGUCGu-----UCCGCu -5'
23150 3' -57.5 NC_005178.1 + 20805 0.67 0.366799
Target:  5'- -aGGCCGCCCUCGcgGUUuGCucGGCc- -3'
miRNA:   3'- uaUCGGCGGGAGC--UAGuCGuuCCGcu -5'
23150 3' -57.5 NC_005178.1 + 2445 0.68 0.357968
Target:  5'- -cGGCCGCCagCGG-CAGCucGGCGGc -3'
miRNA:   3'- uaUCGGCGGgaGCUaGUCGuuCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 11820 0.68 0.357094
Target:  5'- cUGGCCGCCCUggugaccgCGAucauUCGGCAcgaaaacGGGCa- -3'
miRNA:   3'- uAUCGGCGGGA--------GCU----AGUCGU-------UCCGcu -5'
23150 3' -57.5 NC_005178.1 + 36574 0.68 0.340758
Target:  5'- uAUA-CCGCCCUgGugaCAGCAGGGcCGAa -3'
miRNA:   3'- -UAUcGGCGGGAgCua-GUCGUUCC-GCU- -5'
23150 3' -57.5 NC_005178.1 + 22786 0.69 0.300392
Target:  5'- -aGGCCGaCCUggUCGAgcaguaCGGCGAGGCGu -3'
miRNA:   3'- uaUCGGC-GGG--AGCUa-----GUCGUUCCGCu -5'
23150 3' -57.5 NC_005178.1 + 27211 0.69 0.292023
Target:  5'- -gGGCCGucuacgcCCCUCGAcCAGUccagcgucaccGAGGCGAa -3'
miRNA:   3'- uaUCGGC-------GGGAGCUaGUCG-----------UUCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 15152 0.69 0.270835
Target:  5'- -gAGCUGCgCCUCaGUCAGggcggaCAGGGCGAu -3'
miRNA:   3'- uaUCGGCG-GGAGcUAGUC------GUUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.