Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23150 | 5' | -61 | NC_005178.1 | + | 31296 | 0.69 | 0.207283 |
Target: 5'- aGCCGugaCCCAGCgccgGGCUAUGcgccuGGCGCCg -3' miRNA: 3'- cCGGC---GGGUUGa---CCGGUAC-----CUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 21098 | 0.69 | 0.19141 |
Target: 5'- aGGUCGUCCGugUGcGCCGccUGaACGCCUu -3' miRNA: 3'- -CCGGCGGGUugAC-CGGU--ACcUGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 36113 | 0.69 | 0.19141 |
Target: 5'- uGCCGCCCAgguuggGCUGGCgGgugcaGGugGCg- -3' miRNA: 3'- cCGGCGGGU------UGACCGgUa----CCugCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 27878 | 0.69 | 0.19141 |
Target: 5'- aGGCCGCCCAgggcaACUGGgUCAacgGGGCGaCg -3' miRNA: 3'- -CCGGCGGGU-----UGACC-GGUa--CCUGCgGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 20503 | 0.7 | 0.181428 |
Target: 5'- cGCCGCCCccgguaaccccGACccGGCgaaGUGGGCGCCc -3' miRNA: 3'- cCGGCGGG-----------UUGa-CCGg--UACCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28253 | 0.7 | 0.181428 |
Target: 5'- uGCCGCCUcGCUGGCCGc---CGCCa -3' miRNA: 3'- cCGGCGGGuUGACCGGUaccuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 32201 | 0.7 | 0.171911 |
Target: 5'- cGCCGacaCCGAgcguUUGGCCAUcGACGCCg -3' miRNA: 3'- cCGGCg--GGUU----GACCGGUAcCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 23439 | 0.7 | 0.167321 |
Target: 5'- cGCCgacGCCCAggGCgacGGCCA-GGGCGCCc -3' miRNA: 3'- cCGG---CGGGU--UGa--CCGGUaCCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25919 | 0.7 | 0.167321 |
Target: 5'- uGGUCa-CCAGcCUGGCCAgcgGGAUGCCa -3' miRNA: 3'- -CCGGcgGGUU-GACCGGUa--CCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 26397 | 0.71 | 0.134405 |
Target: 5'- aGGaaGCCCAggGCggcGGCCA-GGGCGCCc -3' miRNA: 3'- -CCggCGGGU--UGa--CCGGUaCCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 10726 | 0.71 | 0.144391 |
Target: 5'- gGGCCgaagacaGCCCcGCUGGCCAcagcgcgucccggcUGGAagGCCUg -3' miRNA: 3'- -CCGG-------CGGGuUGACCGGU--------------ACCUg-CGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 32441 | 0.71 | 0.150044 |
Target: 5'- gGGCCGgaaCCCAGCUcagcacgcGGCCAUGGAaGCg- -3' miRNA: 3'- -CCGGC---GGGUUGA--------CCGGUACCUgCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 34639 | 0.7 | 0.167321 |
Target: 5'- uGCgGCUCGAcCUGGCCGaGGcGCGCCa -3' miRNA: 3'- cCGgCGGGUU-GACCGGUaCC-UGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25181 | 0.72 | 0.12716 |
Target: 5'- aGGCCGCCgGuAgUGGCC-UGGGCGgCa -3' miRNA: 3'- -CCGGCGGgU-UgACCGGuACCUGCgGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 8572 | 0.73 | 0.107543 |
Target: 5'- uGCCGCCCA---GGCCAgGGGCGCg- -3' miRNA: 3'- cCGGCGGGUugaCCGGUaCCUGCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 9486 | 0.73 | 0.104563 |
Target: 5'- gGGUCGCCaucCUGGCCA-GGuCGCCa -3' miRNA: 3'- -CCGGCGGguuGACCGGUaCCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28788 | 0.73 | 0.096082 |
Target: 5'- cGCCGCCCGcacGCUGGCCAaGu-CGCCc -3' miRNA: 3'- cCGGCGGGU---UGACCGGUaCcuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 15778 | 0.74 | 0.090794 |
Target: 5'- cGCCGCCUGGCUGGCguUGGAaagcggagcggUGCCc -3' miRNA: 3'- cCGGCGGGUUGACCGguACCU-----------GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12202 | 0.77 | 0.048275 |
Target: 5'- cGGCCaGCCUGGCUGG-CAUGGuCGCCa -3' miRNA: 3'- -CCGG-CGGGUUGACCgGUACCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 1035 | 0.66 | 0.3355 |
Target: 5'- cGGCCGuCCCAuc--GCCAcuagcaaaucuUGGACGCgCUg -3' miRNA: 3'- -CCGGC-GGGUugacCGGU-----------ACCUGCG-GA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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