miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 2760 0.66 0.311909
Target:  5'- cGGuCCGCCaggagacgCAGCUGGCCcUGGucgaaaccaacCGCCa -3'
miRNA:   3'- -CC-GGCGG--------GUUGACCGGuACCu----------GCGGa -5'
23150 5' -61 NC_005178.1 + 3722 0.66 0.3355
Target:  5'- uGGaCCGCCaggccaAGCUGGCCAccuucaagcUGacGCGCCg -3'
miRNA:   3'- -CC-GGCGGg-----UUGACCGGU---------ACc-UGCGGa -5'
23150 5' -61 NC_005178.1 + 6510 0.66 0.327494
Target:  5'- cGCCGCCaccgugcgcaugCggUUGGCCAagGGaAUGCCUc -3'
miRNA:   3'- cCGGCGG------------GuuGACCGGUa-CC-UGCGGA- -5'
23150 5' -61 NC_005178.1 + 11758 0.66 0.327494
Target:  5'- cGGCCgugGCCCGA---GCCAUGGGgguucCGCCg -3'
miRNA:   3'- -CCGG---CGGGUUgacCGGUACCU-----GCGGa -5'
23150 5' -61 NC_005178.1 + 27455 0.66 0.31963
Target:  5'- cGGCgGCCCAGCgcaucaGCC-UGGAccagaagauCGCCg -3'
miRNA:   3'- -CCGgCGGGUUGac----CGGuACCU---------GCGGa -5'
23150 5' -61 NC_005178.1 + 16414 0.66 0.31963
Target:  5'- aGGUgCGCCaugaccuACUGGCUgcGGAUGCCc -3'
miRNA:   3'- -CCG-GCGGgu-----UGACCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 2974 0.66 0.318852
Target:  5'- cGGCCGCCCGagcgcggaugGCUGccgagcgugcgcaGCC-UGGAgCGCUUc -3'
miRNA:   3'- -CCGGCGGGU----------UGAC-------------CGGuACCU-GCGGA- -5'
23150 5' -61 NC_005178.1 + 17144 0.66 0.314981
Target:  5'- cGGCCaCCCAugcccgagcgcugacGgUGGCCAaGGcgucACGCCUg -3'
miRNA:   3'- -CCGGcGGGU---------------UgACCGGUaCC----UGCGGA- -5'
23150 5' -61 NC_005178.1 + 4082 0.66 0.314981
Target:  5'- cGGCga-CCAGgUGGCCGUGGgcuacgacauccacgACGCCa -3'
miRNA:   3'- -CCGgcgGGUUgACCGGUACC---------------UGCGGa -5'
23150 5' -61 NC_005178.1 + 30540 0.66 0.311909
Target:  5'- gGGCUGUgCAACaUGGCCuuccucGCGCCUg -3'
miRNA:   3'- -CCGGCGgGUUG-ACCGGuacc--UGCGGA- -5'
23150 5' -61 NC_005178.1 + 26707 0.76 0.062617
Target:  5'- cGuuGCCgGGgUGGCCAaGGGCGCCUg -3'
miRNA:   3'- cCggCGGgUUgACCGGUaCCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 35379 0.66 0.302084
Target:  5'- cGGCUGCugacgaacaCCAGCgagGGCCAacuggccccggcgcUGGcCGCCa -3'
miRNA:   3'- -CCGGCG---------GGUUGa--CCGGU--------------ACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 4649 0.66 0.296894
Target:  5'- -aCCaCCCAACUGGCCaAUGGcAUgGCCg -3'
miRNA:   3'- ccGGcGGGUUGACCGG-UACC-UG-CGGa -5'
23150 5' -61 NC_005178.1 + 25830 0.67 0.289599
Target:  5'- cGGCaCGUCUGACgccaUGGCCGUGGcCGgCa -3'
miRNA:   3'- -CCG-GCGGGUUG----ACCGGUACCuGCgGa -5'
23150 5' -61 NC_005178.1 + 16561 0.67 0.289599
Target:  5'- gGGCCGaCCUGGCc-GCCAUGGcaACGUCa -3'
miRNA:   3'- -CCGGC-GGGUUGacCGGUACC--UGCGGa -5'
23150 5' -61 NC_005178.1 + 13995 0.67 0.289599
Target:  5'- cGGuuGCCCgAGCUGGuggaCCAcccGGACgGCCa -3'
miRNA:   3'- -CCggCGGG-UUGACC----GGUa--CCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 12049 0.67 0.289599
Target:  5'- uGGCCcugGCCCuguucCUGGUgAUGGuugcgaccaGCGCCUg -3'
miRNA:   3'- -CCGG---CGGGuu---GACCGgUACC---------UGCGGA- -5'
23150 5' -61 NC_005178.1 + 18184 0.67 0.282446
Target:  5'- uGGCgGUUCGGCUGcGCgGUGG-CGUCUa -3'
miRNA:   3'- -CCGgCGGGUUGAC-CGgUACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 16592 0.67 0.282446
Target:  5'- -aCCGCCC--CUGGUCAagcUGGGCGUCc -3'
miRNA:   3'- ccGGCGGGuuGACCGGU---ACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 28552 0.67 0.275434
Target:  5'- gGGCCGUCC-GCcGcGCCAccggGGGCGUCg -3'
miRNA:   3'- -CCGGCGGGuUGaC-CGGUa---CCUGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.