miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 10726 0.71 0.144391
Target:  5'- gGGCCgaagacaGCCCcGCUGGCCAcagcgcgucccggcUGGAagGCCUg -3'
miRNA:   3'- -CCGG-------CGGGuUGACCGGU--------------ACCUg-CGGA- -5'
23150 5' -61 NC_005178.1 + 11715 0.66 0.31963
Target:  5'- uGCCGgCCAc--GGCCAUGG-CGUCa -3'
miRNA:   3'- cCGGCgGGUugaCCGGUACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 11758 0.66 0.327494
Target:  5'- cGGCCgugGCCCGA---GCCAUGGGgguucCGCCg -3'
miRNA:   3'- -CCGG---CGGGUUgacCGGUACCU-----GCGGa -5'
23150 5' -61 NC_005178.1 + 12049 0.67 0.289599
Target:  5'- uGGCCcugGCCCuguucCUGGUgAUGGuugcgaccaGCGCCUg -3'
miRNA:   3'- -CCGG---CGGGuu---GACCGgUACC---------UGCGGA- -5'
23150 5' -61 NC_005178.1 + 12098 0.67 0.268561
Target:  5'- uGGUCGCgUGGCgggccUGGCCgAUGGGCGCg- -3'
miRNA:   3'- -CCGGCGgGUUG-----ACCGG-UACCUGCGga -5'
23150 5' -61 NC_005178.1 + 12202 0.77 0.048275
Target:  5'- cGGCCaGCCUGGCUGG-CAUGGuCGCCa -3'
miRNA:   3'- -CCGG-CGGGUUGACCgGUACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 12370 0.67 0.282446
Target:  5'- aGCC-CCCGGCgaaGCCAUGGuugacCGCCa -3'
miRNA:   3'- cCGGcGGGUUGac-CGGUACCu----GCGGa -5'
23150 5' -61 NC_005178.1 + 12657 0.7 0.162841
Target:  5'- cGGCgGCCgGcgcGCUGGCg--GGugGCCUg -3'
miRNA:   3'- -CCGgCGGgU---UGACCGguaCCugCGGA- -5'
23150 5' -61 NC_005178.1 + 13887 0.7 0.15847
Target:  5'- cGCCGCCCGGCgugaacgGGCCAgcgcGGAcuaugaguauuuCGCCc -3'
miRNA:   3'- cCGGCGGGUUGa------CCGGUa---CCU------------GCGGa -5'
23150 5' -61 NC_005178.1 + 13995 0.67 0.289599
Target:  5'- cGGuuGCCCgAGCUGGuggaCCAcccGGACgGCCa -3'
miRNA:   3'- -CCggCGGG-UUGACC----GGUa--CCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 14077 0.69 0.212822
Target:  5'- cGGCCGagCAGCgGGCCGgcuucgcgccGGGCGCCc -3'
miRNA:   3'- -CCGGCggGUUGaCCGGUa---------CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 14182 0.69 0.207283
Target:  5'- -aUCGCCCGACUGccGCCcugGUGcGACGCCc -3'
miRNA:   3'- ccGGCGGGUUGAC--CGG---UAC-CUGCGGa -5'
23150 5' -61 NC_005178.1 + 14253 0.67 0.257854
Target:  5'- aGGCgaGCCCuGGCgcuguucgucaagggUGGCCAgaucggGGACGCCc -3'
miRNA:   3'- -CCGg-CGGG-UUG---------------ACCGGUa-----CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 14736 0.86 0.009314
Target:  5'- cGGUCGCUCAGCUGGCgGaUGGACGCCUc -3'
miRNA:   3'- -CCGGCGGGUUGACCGgU-ACCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 15261 0.67 0.255232
Target:  5'- cGGCCGCagaccaCGACgaUGGCCcc-GACGCCc -3'
miRNA:   3'- -CCGGCGg-----GUUG--ACCGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 15284 0.66 0.327494
Target:  5'- cGCCGCCUGGCgGGCCAgccUGGcgguCGgCUu -3'
miRNA:   3'- cCGGCGGGUUGaCCGGU---ACCu---GCgGA- -5'
23150 5' -61 NC_005178.1 + 15778 0.74 0.090794
Target:  5'- cGCCGCCUGGCUGGCguUGGAaagcggagcggUGCCc -3'
miRNA:   3'- cCGGCGGGUUGACCGguACCU-----------GCGGa -5'
23150 5' -61 NC_005178.1 + 15934 0.66 0.31963
Target:  5'- aGCCGCCgagUAACcGGCCAUcuuCGCCUg -3'
miRNA:   3'- cCGGCGG---GUUGaCCGGUAccuGCGGA- -5'
23150 5' -61 NC_005178.1 + 16414 0.66 0.31963
Target:  5'- aGGUgCGCCaugaccuACUGGCUgcGGAUGCCc -3'
miRNA:   3'- -CCG-GCGGgu-----UGACCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 16561 0.67 0.289599
Target:  5'- gGGCCGaCCUGGCc-GCCAUGGcaACGUCa -3'
miRNA:   3'- -CCGGC-GGGUUGacCGGUACC--UGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.