miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 1035 0.66 0.3355
Target:  5'- cGGCCGuCCCAuc--GCCAcuagcaaaucuUGGACGCgCUg -3'
miRNA:   3'- -CCGGC-GGGUugacCGGU-----------ACCUGCG-GA- -5'
23150 5' -61 NC_005178.1 + 2731 0.69 0.207283
Target:  5'- cGCCGCCCug--GGCgA-GGugGCCa -3'
miRNA:   3'- cCGGCGGGuugaCCGgUaCCugCGGa -5'
23150 5' -61 NC_005178.1 + 2760 0.66 0.311909
Target:  5'- cGGuCCGCCaggagacgCAGCUGGCCcUGGucgaaaccaacCGCCa -3'
miRNA:   3'- -CC-GGCGG--------GUUGACCGGuACCu----------GCGGa -5'
23150 5' -61 NC_005178.1 + 2822 0.67 0.282446
Target:  5'- cGGCCGaCCCgAACgacGGUUucagGGAUGCCg -3'
miRNA:   3'- -CCGGC-GGG-UUGa--CCGGua--CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 2974 0.66 0.318852
Target:  5'- cGGCCGCCCGagcgcggaugGCUGccgagcgugcgcaGCC-UGGAgCGCUUc -3'
miRNA:   3'- -CCGGCGGGU----------UGAC-------------CGGuACCU-GCGGA- -5'
23150 5' -61 NC_005178.1 + 3064 0.68 0.230206
Target:  5'- cGCCGCCCGGacaUGagcguucCCGacUGGGCGCCUg -3'
miRNA:   3'- cCGGCGGGUUg--ACc------GGU--ACCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 3643 0.69 0.207283
Target:  5'- aGGCCGCCgAGCaucgccGCCAggcgcggcaGGACGCCc -3'
miRNA:   3'- -CCGGCGGgUUGac----CGGUa--------CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 3722 0.66 0.3355
Target:  5'- uGGaCCGCCaggccaAGCUGGCCAccuucaagcUGacGCGCCg -3'
miRNA:   3'- -CC-GGCGGg-----UUGACCGGU---------ACc-UGCGGa -5'
23150 5' -61 NC_005178.1 + 4014 0.67 0.282446
Target:  5'- aGCCaUCCAAUUuaGGCCAUGG-CGCUUg -3'
miRNA:   3'- cCGGcGGGUUGA--CCGGUACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 4082 0.66 0.314981
Target:  5'- cGGCga-CCAGgUGGCCGUGGgcuacgacauccacgACGCCa -3'
miRNA:   3'- -CCGgcgGGUUgACCGGUACC---------------UGCGGa -5'
23150 5' -61 NC_005178.1 + 4532 0.68 0.248773
Target:  5'- cGGCCuGCCCAucgaGCC--GGACGCCg -3'
miRNA:   3'- -CCGG-CGGGUugacCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 4649 0.66 0.296894
Target:  5'- -aCCaCCCAACUGGCCaAUGGcAUgGCCg -3'
miRNA:   3'- ccGGcGGGUUGACCGG-UACC-UG-CGGa -5'
23150 5' -61 NC_005178.1 + 6510 0.66 0.327494
Target:  5'- cGCCGCCaccgugcgcaugCggUUGGCCAagGGaAUGCCUc -3'
miRNA:   3'- cCGGCGG------------GuuGACCGGUa-CC-UGCGGA- -5'
23150 5' -61 NC_005178.1 + 7300 0.74 0.083377
Target:  5'- cGCCGCCCGGCUGcuccaGCgCAUGGGggucCGCCUu -3'
miRNA:   3'- cCGGCGGGUUGAC-----CG-GUACCU----GCGGA- -5'
23150 5' -61 NC_005178.1 + 7391 0.66 0.311909
Target:  5'- uGGCCGCCCGuauaGCC---GACGCCa -3'
miRNA:   3'- -CCGGCGGGUugacCGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 8572 0.73 0.107543
Target:  5'- uGCCGCCCA---GGCCAgGGGCGCg- -3'
miRNA:   3'- cCGGCGGGUugaCCGGUaCCUGCGga -5'
23150 5' -61 NC_005178.1 + 8833 0.66 0.327494
Target:  5'- cGCCGCCCuuGCcGGCCcacauGUcGGcCGCCa -3'
miRNA:   3'- cCGGCGGGu-UGaCCGG-----UA-CCuGCGGa -5'
23150 5' -61 NC_005178.1 + 9357 0.66 0.296894
Target:  5'- uGCCG-CCAGCagucGCCA-GGGCGCCg -3'
miRNA:   3'- cCGGCgGGUUGac--CGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 9486 0.73 0.104563
Target:  5'- gGGUCGCCaucCUGGCCA-GGuCGCCa -3'
miRNA:   3'- -CCGGCGGguuGACCGGUaCCuGCGGa -5'
23150 5' -61 NC_005178.1 + 9832 0.75 0.066324
Target:  5'- cGCCaagGCCCAGCUGGgCAUGGACGaugacaCCUa -3'
miRNA:   3'- cCGG---CGGGUUGACCgGUACCUGC------GGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.