miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 36113 0.69 0.19141
Target:  5'- uGCCGCCCAgguuggGCUGGCgGgugcaGGugGCg- -3'
miRNA:   3'- cCGGCGGGU------UGACCGgUa----CCugCGga -5'
23150 5' -61 NC_005178.1 + 35379 0.66 0.302084
Target:  5'- cGGCUGCugacgaacaCCAGCgagGGCCAacuggccccggcgcUGGcCGCCa -3'
miRNA:   3'- -CCGGCG---------GGUUGa--CCGGU--------------ACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 34984 0.71 0.145986
Target:  5'- uGGCCGC---GCUGGCCGaGG-CGCCg -3'
miRNA:   3'- -CCGGCGgguUGACCGGUaCCuGCGGa -5'
23150 5' -61 NC_005178.1 + 34639 0.7 0.167321
Target:  5'- uGCgGCUCGAcCUGGCCGaGGcGCGCCa -3'
miRNA:   3'- cCGgCGGGUU-GACCGGUaCC-UGCGGa -5'
23150 5' -61 NC_005178.1 + 34567 0.66 0.327494
Target:  5'- cGCaCGCUCGGCaGGCCAUccgcgcucGGGCgGCCg -3'
miRNA:   3'- cCG-GCGGGUUGaCCGGUA--------CCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 34034 0.66 0.30433
Target:  5'- cGuuGUCCAcguagaagaUGGCCG-GGACGCCg -3'
miRNA:   3'- cCggCGGGUug-------ACCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 33792 0.67 0.282446
Target:  5'- uGCCGCCCuuggcgaUGGCCcgGcGCGUCa -3'
miRNA:   3'- cCGGCGGGuug----ACCGGuaCcUGCGGa -5'
23150 5' -61 NC_005178.1 + 33429 0.66 0.326701
Target:  5'- cGCCGucguagacccacaCCCuGCUGGCguCGUGGAUGUCg -3'
miRNA:   3'- cCGGC-------------GGGuUGACCG--GUACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 32441 0.71 0.150044
Target:  5'- gGGCCGgaaCCCAGCUcagcacgcGGCCAUGGAaGCg- -3'
miRNA:   3'- -CCGGC---GGGUUGA--------CCGGUACCUgCGga -5'
23150 5' -61 NC_005178.1 + 32201 0.7 0.171911
Target:  5'- cGCCGacaCCGAgcguUUGGCCAUcGACGCCg -3'
miRNA:   3'- cCGGCg--GGUU----GACCGGUAcCUGCGGa -5'
23150 5' -61 NC_005178.1 + 31296 0.69 0.207283
Target:  5'- aGCCGugaCCCAGCgccgGGCUAUGcgccuGGCGCCg -3'
miRNA:   3'- cCGGC---GGGUUGa---CCGGUAC-----CUGCGGa -5'
23150 5' -61 NC_005178.1 + 30540 0.66 0.311909
Target:  5'- gGGCUGUgCAACaUGGCCuuccucGCGCCUg -3'
miRNA:   3'- -CCGGCGgGUUG-ACCGGuacc--UGCGGA- -5'
23150 5' -61 NC_005178.1 + 28980 0.67 0.268561
Target:  5'- uGCgCGCCC--CUGGCC-UGGGCGgCa -3'
miRNA:   3'- cCG-GCGGGuuGACCGGuACCUGCgGa -5'
23150 5' -61 NC_005178.1 + 28788 0.73 0.096082
Target:  5'- cGCCGCCCGcacGCUGGCCAaGu-CGCCc -3'
miRNA:   3'- cCGGCGGGU---UGACCGGUaCcuGCGGa -5'
23150 5' -61 NC_005178.1 + 28648 0.67 0.289599
Target:  5'- gGGCCGaUCCuGCUGGCCcagggucUGGAUGUa- -3'
miRNA:   3'- -CCGGC-GGGuUGACCGGu------ACCUGCGga -5'
23150 5' -61 NC_005178.1 + 28552 0.67 0.275434
Target:  5'- gGGCCGUCC-GCcGcGCCAccggGGGCGUCg -3'
miRNA:   3'- -CCGGCGGGuUGaC-CGGUa---CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 28315 0.67 0.255232
Target:  5'- gGGCCGCUgGAgUGGC--UGGugGCg- -3'
miRNA:   3'- -CCGGCGGgUUgACCGguACCugCGga -5'
23150 5' -61 NC_005178.1 + 28253 0.7 0.181428
Target:  5'- uGCCGCCUcGCUGGCCGc---CGCCa -3'
miRNA:   3'- cCGGCGGGuUGACCGGUaccuGCGGa -5'
23150 5' -61 NC_005178.1 + 27878 0.69 0.19141
Target:  5'- aGGCCGCCCAgggcaACUGGgUCAacgGGGCGaCg -3'
miRNA:   3'- -CCGGCGGGU-----UGACC-GGUa--CCUGCgGa -5'
23150 5' -61 NC_005178.1 + 27657 0.68 0.224282
Target:  5'- uGCCGCCgCuGCcgUGGgCAUGGGCGCg- -3'
miRNA:   3'- cCGGCGG-GuUG--ACCgGUACCUGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.