miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 26707 0.76 0.062617
Target:  5'- cGuuGCCgGGgUGGCCAaGGGCGCCUg -3'
miRNA:   3'- cCggCGGgUUgACCGGUaCCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 36113 0.69 0.19141
Target:  5'- uGCCGCCCAgguuggGCUGGCgGgugcaGGugGCg- -3'
miRNA:   3'- cCGGCGGGU------UGACCGgUa----CCugCGga -5'
23150 5' -61 NC_005178.1 + 27878 0.69 0.19141
Target:  5'- aGGCCGCCCAgggcaACUGGgUCAacgGGGCGaCg -3'
miRNA:   3'- -CCGGCGGGU-----UGACC-GGUa--CCUGCgGa -5'
23150 5' -61 NC_005178.1 + 20503 0.7 0.181428
Target:  5'- cGCCGCCCccgguaaccccGACccGGCgaaGUGGGCGCCc -3'
miRNA:   3'- cCGGCGGG-----------UUGa-CCGg--UACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 28253 0.7 0.181428
Target:  5'- uGCCGCCUcGCUGGCCGc---CGCCa -3'
miRNA:   3'- cCGGCGGGuUGACCGGUaccuGCGGa -5'
23150 5' -61 NC_005178.1 + 32201 0.7 0.171911
Target:  5'- cGCCGacaCCGAgcguUUGGCCAUcGACGCCg -3'
miRNA:   3'- cCGGCg--GGUU----GACCGGUAcCUGCGGa -5'
23150 5' -61 NC_005178.1 + 23439 0.7 0.167321
Target:  5'- cGCCgacGCCCAggGCgacGGCCA-GGGCGCCc -3'
miRNA:   3'- cCGG---CGGGU--UGa--CCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 25919 0.7 0.167321
Target:  5'- uGGUCa-CCAGcCUGGCCAgcgGGAUGCCa -3'
miRNA:   3'- -CCGGcgGGUU-GACCGGUa--CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 20805 0.7 0.167321
Target:  5'- aGGCCGCCCucgcgguuuGCUcGGCCAUGcaGAUcaaGCCg -3'
miRNA:   3'- -CCGGCGGGu--------UGA-CCGGUAC--CUG---CGGa -5'
23150 5' -61 NC_005178.1 + 16703 0.7 0.167321
Target:  5'- aGGCauCGCCCAACUGaGCC---GGCGCCc -3'
miRNA:   3'- -CCG--GCGGGUUGAC-CGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 12657 0.7 0.162841
Target:  5'- cGGCgGCCgGcgcGCUGGCg--GGugGCCUg -3'
miRNA:   3'- -CCGgCGGgU---UGACCGguaCCugCGGA- -5'
23150 5' -61 NC_005178.1 + 13887 0.7 0.15847
Target:  5'- cGCCGCCCGGCgugaacgGGCCAgcgcGGAcuaugaguauuuCGCCc -3'
miRNA:   3'- cCGGCGGGUUGa------CCGGUa---CCU------------GCGGa -5'
23150 5' -61 NC_005178.1 + 25409 0.7 0.154205
Target:  5'- aGGCgGCCCGGaucaaGGCgAUGGuCGCCg -3'
miRNA:   3'- -CCGgCGGGUUga---CCGgUACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 34984 0.71 0.145986
Target:  5'- uGGCCGC---GCUGGCCGaGG-CGCCg -3'
miRNA:   3'- -CCGGCGgguUGACCGGUaCCuGCGGa -5'
23150 5' -61 NC_005178.1 + 17339 0.71 0.142028
Target:  5'- aGGUCGCCCAGCUcGGCagcccGCGCCg -3'
miRNA:   3'- -CCGGCGGGUUGA-CCGguaccUGCGGa -5'
23150 5' -61 NC_005178.1 + 22549 0.72 0.116969
Target:  5'- gGGaCCGCCC--CUGGCCAcGGAUgGCCa -3'
miRNA:   3'- -CC-GGCGGGuuGACCGGUaCCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 20381 0.74 0.090794
Target:  5'- -aCCGCCCugaAGCcGGCCcUGGACGCCc -3'
miRNA:   3'- ccGGCGGG---UUGaCCGGuACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 7300 0.74 0.083377
Target:  5'- cGCCGCCCGGCUGcuccaGCgCAUGGGggucCGCCUu -3'
miRNA:   3'- cCGGCGGGUUGAC-----CG-GUACCU----GCGGA- -5'
23150 5' -61 NC_005178.1 + 9832 0.75 0.066324
Target:  5'- cGCCaagGCCCAGCUGGgCAUGGACGaugacaCCUa -3'
miRNA:   3'- cCGG---CGGGUUGACCgGUACCUGC------GGA- -5'
23150 5' -61 NC_005178.1 + 26607 1.09 0.00015
Target:  5'- gGGCCGCCCAACUGGCCAUGGACGCCUa -3'
miRNA:   3'- -CCGGCGGGUUGACCGGUACCUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.