miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 2760 0.66 0.311909
Target:  5'- cGGuCCGCCaggagacgCAGCUGGCCcUGGucgaaaccaacCGCCa -3'
miRNA:   3'- -CC-GGCGG--------GUUGACCGGuACCu----------GCGGa -5'
23150 5' -61 NC_005178.1 + 15934 0.66 0.31963
Target:  5'- aGCCGCCgagUAACcGGCCAUcuuCGCCUg -3'
miRNA:   3'- cCGGCGG---GUUGaCCGGUAccuGCGGA- -5'
23150 5' -61 NC_005178.1 + 4649 0.66 0.296894
Target:  5'- -aCCaCCCAACUGGCCaAUGGcAUgGCCg -3'
miRNA:   3'- ccGGcGGGUUGACCGG-UACC-UG-CGGa -5'
23150 5' -61 NC_005178.1 + 35379 0.66 0.302084
Target:  5'- cGGCUGCugacgaacaCCAGCgagGGCCAacuggccccggcgcUGGcCGCCa -3'
miRNA:   3'- -CCGGCG---------GGUUGa--CCGGU--------------ACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 7391 0.66 0.311909
Target:  5'- uGGCCGCCCGuauaGCC---GACGCCa -3'
miRNA:   3'- -CCGGCGGGUugacCGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 3722 0.66 0.3355
Target:  5'- uGGaCCGCCaggccaAGCUGGCCAccuucaagcUGacGCGCCg -3'
miRNA:   3'- -CC-GGCGGg-----UUGACCGGU---------ACc-UGCGGa -5'
23150 5' -61 NC_005178.1 + 20635 0.66 0.31963
Target:  5'- uGUCGUCCAuauccgggaauGCcucGGCCA-GGGCGCCg -3'
miRNA:   3'- cCGGCGGGU-----------UGa--CCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 30540 0.66 0.311909
Target:  5'- gGGCUGUgCAACaUGGCCuuccucGCGCCUg -3'
miRNA:   3'- -CCGGCGgGUUG-ACCGGuacc--UGCGGA- -5'
23150 5' -61 NC_005178.1 + 4082 0.66 0.314981
Target:  5'- cGGCga-CCAGgUGGCCGUGGgcuacgacauccacgACGCCa -3'
miRNA:   3'- -CCGgcgGGUUgACCGGUACC---------------UGCGGa -5'
23150 5' -61 NC_005178.1 + 1035 0.66 0.3355
Target:  5'- cGGCCGuCCCAuc--GCCAcuagcaaaucuUGGACGCgCUg -3'
miRNA:   3'- -CCGGC-GGGUugacCGGU-----------ACCUGCG-GA- -5'
23150 5' -61 NC_005178.1 + 22597 0.66 0.31963
Target:  5'- uGGCgGCCuCGACcacGuCCA-GGACGCCUg -3'
miRNA:   3'- -CCGgCGG-GUUGac-C-GGUaCCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 34034 0.66 0.30433
Target:  5'- cGuuGUCCAcguagaagaUGGCCG-GGACGCCg -3'
miRNA:   3'- cCggCGGGUug-------ACCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 2974 0.66 0.318852
Target:  5'- cGGCCGCCCGagcgcggaugGCUGccgagcgugcgcaGCC-UGGAgCGCUUc -3'
miRNA:   3'- -CCGGCGGGU----------UGAC-------------CGGuACCU-GCGGA- -5'
23150 5' -61 NC_005178.1 + 27455 0.66 0.31963
Target:  5'- cGGCgGCCCAGCgcaucaGCC-UGGAccagaagauCGCCg -3'
miRNA:   3'- -CCGgCGGGUUGac----CGGuACCU---------GCGGa -5'
23150 5' -61 NC_005178.1 + 16414 0.66 0.31963
Target:  5'- aGGUgCGCCaugaccuACUGGCUgcGGAUGCCc -3'
miRNA:   3'- -CCG-GCGGgu-----UGACCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 11758 0.66 0.327494
Target:  5'- cGGCCgugGCCCGA---GCCAUGGGgguucCGCCg -3'
miRNA:   3'- -CCGG---CGGGUUgacCGGUACCU-----GCGGa -5'
23150 5' -61 NC_005178.1 + 6510 0.66 0.327494
Target:  5'- cGCCGCCaccgugcgcaugCggUUGGCCAagGGaAUGCCUc -3'
miRNA:   3'- cCGGCGG------------GuuGACCGGUa-CC-UGCGGA- -5'
23150 5' -61 NC_005178.1 + 9357 0.66 0.296894
Target:  5'- uGCCG-CCAGCagucGCCA-GGGCGCCg -3'
miRNA:   3'- cCGGCgGGUUGac--CGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 11715 0.66 0.31963
Target:  5'- uGCCGgCCAc--GGCCAUGG-CGUCa -3'
miRNA:   3'- cCGGCgGGUugaCCGGUACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 20821 0.66 0.31963
Target:  5'- gGGCCaGCgCAGCgaugcgaGGaCCA-GGGCGCCg -3'
miRNA:   3'- -CCGG-CGgGUUGa------CC-GGUaCCUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.