miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 27455 0.66 0.31963
Target:  5'- cGGCgGCCCAGCgcaucaGCC-UGGAccagaagauCGCCg -3'
miRNA:   3'- -CCGgCGGGUUGac----CGGuACCU---------GCGGa -5'
23150 5' -61 NC_005178.1 + 15934 0.66 0.31963
Target:  5'- aGCCGCCgagUAACcGGCCAUcuuCGCCUg -3'
miRNA:   3'- cCGGCGG---GUUGaCCGGUAccuGCGGA- -5'
23150 5' -61 NC_005178.1 + 16414 0.66 0.31963
Target:  5'- aGGUgCGCCaugaccuACUGGCUgcGGAUGCCc -3'
miRNA:   3'- -CCG-GCGGgu-----UGACCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 2974 0.66 0.318852
Target:  5'- cGGCCGCCCGagcgcggaugGCUGccgagcgugcgcaGCC-UGGAgCGCUUc -3'
miRNA:   3'- -CCGGCGGGU----------UGAC-------------CGGuACCU-GCGGA- -5'
23150 5' -61 NC_005178.1 + 17144 0.66 0.314981
Target:  5'- cGGCCaCCCAugcccgagcgcugacGgUGGCCAaGGcgucACGCCUg -3'
miRNA:   3'- -CCGGcGGGU---------------UgACCGGUaCC----UGCGGA- -5'
23150 5' -61 NC_005178.1 + 4082 0.66 0.314981
Target:  5'- cGGCga-CCAGgUGGCCGUGGgcuacgacauccacgACGCCa -3'
miRNA:   3'- -CCGgcgGGUUgACCGGUACC---------------UGCGGa -5'
23150 5' -61 NC_005178.1 + 16561 0.67 0.289599
Target:  5'- gGGCCGaCCUGGCc-GCCAUGGcaACGUCa -3'
miRNA:   3'- -CCGGC-GGGUUGacCGGUACC--UGCGGa -5'
23150 5' -61 NC_005178.1 + 25830 0.67 0.289599
Target:  5'- cGGCaCGUCUGACgccaUGGCCGUGGcCGgCa -3'
miRNA:   3'- -CCG-GCGGGUUG----ACCGGUACCuGCgGa -5'
23150 5' -61 NC_005178.1 + 21192 0.67 0.282446
Target:  5'- cGCCGCCCGacucGCUGGUCuggcUGGugagcgUGCCg -3'
miRNA:   3'- cCGGCGGGU----UGACCGGu---ACCu-----GCGGa -5'
23150 5' -61 NC_005178.1 + 28980 0.67 0.268561
Target:  5'- uGCgCGCCC--CUGGCC-UGGGCGgCa -3'
miRNA:   3'- cCG-GCGGGuuGACCGGuACCUGCgGa -5'
23150 5' -61 NC_005178.1 + 12098 0.67 0.268561
Target:  5'- uGGUCGCgUGGCgggccUGGCCgAUGGGCGCg- -3'
miRNA:   3'- -CCGGCGgGUUG-----ACCGG-UACCUGCGga -5'
23150 5' -61 NC_005178.1 + 2822 0.67 0.282446
Target:  5'- cGGCCGaCCCgAACgacGGUUucagGGAUGCCg -3'
miRNA:   3'- -CCGGC-GGG-UUGa--CCGGua--CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 4014 0.67 0.282446
Target:  5'- aGCCaUCCAAUUuaGGCCAUGG-CGCUUg -3'
miRNA:   3'- cCGGcGGGUUGA--CCGGUACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 28648 0.67 0.289599
Target:  5'- gGGCCGaUCCuGCUGGCCcagggucUGGAUGUa- -3'
miRNA:   3'- -CCGGC-GGGuUGACCGGu------ACCUGCGga -5'
23150 5' -61 NC_005178.1 + 20755 0.67 0.268561
Target:  5'- gGGCCGgCaGGCUGGCCAgcaccUGGuccaGCGCUUc -3'
miRNA:   3'- -CCGGCgGgUUGACCGGU-----ACC----UGCGGA- -5'
23150 5' -61 NC_005178.1 + 14253 0.67 0.257854
Target:  5'- aGGCgaGCCCuGGCgcuguucgucaagggUGGCCAgaucggGGACGCCc -3'
miRNA:   3'- -CCGg-CGGG-UUG---------------ACCGGUa-----CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 25443 0.67 0.255232
Target:  5'- cGGCgCGCCCAuc-GGCCA-GGccCGCCa -3'
miRNA:   3'- -CCG-GCGGGUugaCCGGUaCCu-GCGGa -5'
23150 5' -61 NC_005178.1 + 33792 0.67 0.282446
Target:  5'- uGCCGCCCuuggcgaUGGCCcgGcGCGUCa -3'
miRNA:   3'- cCGGCGGGuug----ACCGGuaCcUGCGGa -5'
23150 5' -61 NC_005178.1 + 15261 0.67 0.255232
Target:  5'- cGGCCGCagaccaCGACgaUGGCCcc-GACGCCc -3'
miRNA:   3'- -CCGGCGg-----GUUG--ACCGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 28315 0.67 0.255232
Target:  5'- gGGCCGCUgGAgUGGC--UGGugGCg- -3'
miRNA:   3'- -CCGGCGGgUUgACCGguACCugCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.