Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23150 | 5' | -61 | NC_005178.1 | + | 34639 | 0.7 | 0.167321 |
Target: 5'- uGCgGCUCGAcCUGGCCGaGGcGCGCCa -3' miRNA: 3'- cCGgCGGGUU-GACCGGUaCC-UGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 13887 | 0.7 | 0.15847 |
Target: 5'- cGCCGCCCGGCgugaacgGGCCAgcgcGGAcuaugaguauuuCGCCc -3' miRNA: 3'- cCGGCGGGUUGa------CCGGUa---CCU------------GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12657 | 0.7 | 0.162841 |
Target: 5'- cGGCgGCCgGcgcGCUGGCg--GGugGCCUg -3' miRNA: 3'- -CCGgCGGgU---UGACCGguaCCugCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 16703 | 0.7 | 0.167321 |
Target: 5'- aGGCauCGCCCAACUGaGCC---GGCGCCc -3' miRNA: 3'- -CCG--GCGGGUUGAC-CGGuacCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 20805 | 0.7 | 0.167321 |
Target: 5'- aGGCCGCCCucgcgguuuGCUcGGCCAUGcaGAUcaaGCCg -3' miRNA: 3'- -CCGGCGGGu--------UGA-CCGGUAC--CUG---CGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 20503 | 0.7 | 0.181428 |
Target: 5'- cGCCGCCCccgguaaccccGACccGGCgaaGUGGGCGCCc -3' miRNA: 3'- cCGGCGGG-----------UUGa-CCGg--UACCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28253 | 0.7 | 0.181428 |
Target: 5'- uGCCGCCUcGCUGGCCGc---CGCCa -3' miRNA: 3'- cCGGCGGGuUGACCGGUaccuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 32201 | 0.7 | 0.171911 |
Target: 5'- cGCCGacaCCGAgcguUUGGCCAUcGACGCCg -3' miRNA: 3'- cCGGCg--GGUU----GACCGGUAcCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25919 | 0.7 | 0.167321 |
Target: 5'- uGGUCa-CCAGcCUGGCCAgcgGGAUGCCa -3' miRNA: 3'- -CCGGcgGGUU-GACCGGUa--CCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 3643 | 0.69 | 0.207283 |
Target: 5'- aGGCCGCCgAGCaucgccGCCAggcgcggcaGGACGCCc -3' miRNA: 3'- -CCGGCGGgUUGac----CGGUa--------CCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 2731 | 0.69 | 0.207283 |
Target: 5'- cGCCGCCCug--GGCgA-GGugGCCa -3' miRNA: 3'- cCGGCGGGuugaCCGgUaCCugCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 31296 | 0.69 | 0.207283 |
Target: 5'- aGCCGugaCCCAGCgccgGGCUAUGcgccuGGCGCCg -3' miRNA: 3'- cCGGC---GGGUUGa---CCGGUAC-----CUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 36113 | 0.69 | 0.19141 |
Target: 5'- uGCCGCCCAgguuggGCUGGCgGgugcaGGugGCg- -3' miRNA: 3'- cCGGCGGGU------UGACCGgUa----CCugCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 21098 | 0.69 | 0.19141 |
Target: 5'- aGGUCGUCCGugUGcGCCGccUGaACGCCUu -3' miRNA: 3'- -CCGGCGGGUugAC-CGGU--ACcUGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 27878 | 0.69 | 0.19141 |
Target: 5'- aGGCCGCCCAgggcaACUGGgUCAacgGGGCGaCg -3' miRNA: 3'- -CCGGCGGGU-----UGACC-GGUa--CCUGCgGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 17127 | 0.69 | 0.201869 |
Target: 5'- aGGCCgaggguuucGCgCAGCuUGGCCAgguUGGuCGCCUg -3' miRNA: 3'- -CCGG---------CGgGUUG-ACCGGU---ACCuGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 14077 | 0.69 | 0.212822 |
Target: 5'- cGGCCGagCAGCgGGCCGgcuucgcgccGGGCGCCc -3' miRNA: 3'- -CCGGCggGUUGaCCGGUa---------CCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 14182 | 0.69 | 0.207283 |
Target: 5'- -aUCGCCCGACUGccGCCcugGUGcGACGCCc -3' miRNA: 3'- ccGGCGGGUUGAC--CGG---UAC-CUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 18525 | 0.69 | 0.207283 |
Target: 5'- --gUGCCCGACUGGaUCA-GGACGCUg -3' miRNA: 3'- ccgGCGGGUUGACC-GGUaCCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 22856 | 0.68 | 0.242451 |
Target: 5'- gGGCUGCCCAuCcGGCCAgcagaUGaucGCGCCg -3' miRNA: 3'- -CCGGCGGGUuGaCCGGU-----ACc--UGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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