miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 12657 0.7 0.162841
Target:  5'- cGGCgGCCgGcgcGCUGGCg--GGugGCCUg -3'
miRNA:   3'- -CCGgCGGgU---UGACCGguaCCugCGGA- -5'
23150 5' -61 NC_005178.1 + 16703 0.7 0.167321
Target:  5'- aGGCauCGCCCAACUGaGCC---GGCGCCc -3'
miRNA:   3'- -CCG--GCGGGUUGAC-CGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 25919 0.7 0.167321
Target:  5'- uGGUCa-CCAGcCUGGCCAgcgGGAUGCCa -3'
miRNA:   3'- -CCGGcgGGUU-GACCGGUa--CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 34639 0.7 0.167321
Target:  5'- uGCgGCUCGAcCUGGCCGaGGcGCGCCa -3'
miRNA:   3'- cCGgCGGGUU-GACCGGUaCC-UGCGGa -5'
23150 5' -61 NC_005178.1 + 20805 0.7 0.167321
Target:  5'- aGGCCGCCCucgcgguuuGCUcGGCCAUGcaGAUcaaGCCg -3'
miRNA:   3'- -CCGGCGGGu--------UGA-CCGGUAC--CUG---CGGa -5'
23150 5' -61 NC_005178.1 + 23439 0.7 0.167321
Target:  5'- cGCCgacGCCCAggGCgacGGCCA-GGGCGCCc -3'
miRNA:   3'- cCGG---CGGGU--UGa--CCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 32201 0.7 0.171911
Target:  5'- cGCCGacaCCGAgcguUUGGCCAUcGACGCCg -3'
miRNA:   3'- cCGGCg--GGUU----GACCGGUAcCUGCGGa -5'
23150 5' -61 NC_005178.1 + 28253 0.7 0.181428
Target:  5'- uGCCGCCUcGCUGGCCGc---CGCCa -3'
miRNA:   3'- cCGGCGGGuUGACCGGUaccuGCGGa -5'
23150 5' -61 NC_005178.1 + 20503 0.7 0.181428
Target:  5'- cGCCGCCCccgguaaccccGACccGGCgaaGUGGGCGCCc -3'
miRNA:   3'- cCGGCGGG-----------UUGa-CCGg--UACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 21098 0.69 0.19141
Target:  5'- aGGUCGUCCGugUGcGCCGccUGaACGCCUu -3'
miRNA:   3'- -CCGGCGGGUugAC-CGGU--ACcUGCGGA- -5'
23150 5' -61 NC_005178.1 + 27878 0.69 0.19141
Target:  5'- aGGCCGCCCAgggcaACUGGgUCAacgGGGCGaCg -3'
miRNA:   3'- -CCGGCGGGU-----UGACC-GGUa--CCUGCgGa -5'
23150 5' -61 NC_005178.1 + 36113 0.69 0.19141
Target:  5'- uGCCGCCCAgguuggGCUGGCgGgugcaGGugGCg- -3'
miRNA:   3'- cCGGCGGGU------UGACCGgUa----CCugCGga -5'
23150 5' -61 NC_005178.1 + 17127 0.69 0.201869
Target:  5'- aGGCCgaggguuucGCgCAGCuUGGCCAgguUGGuCGCCUg -3'
miRNA:   3'- -CCGG---------CGgGUUG-ACCGGU---ACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 18525 0.69 0.207283
Target:  5'- --gUGCCCGACUGGaUCA-GGACGCUg -3'
miRNA:   3'- ccgGCGGGUUGACC-GGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 31296 0.69 0.207283
Target:  5'- aGCCGugaCCCAGCgccgGGCUAUGcgccuGGCGCCg -3'
miRNA:   3'- cCGGC---GGGUUGa---CCGGUAC-----CUGCGGa -5'
23150 5' -61 NC_005178.1 + 2731 0.69 0.207283
Target:  5'- cGCCGCCCug--GGCgA-GGugGCCa -3'
miRNA:   3'- cCGGCGGGuugaCCGgUaCCugCGGa -5'
23150 5' -61 NC_005178.1 + 3643 0.69 0.207283
Target:  5'- aGGCCGCCgAGCaucgccGCCAggcgcggcaGGACGCCc -3'
miRNA:   3'- -CCGGCGGgUUGac----CGGUa--------CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 14182 0.69 0.207283
Target:  5'- -aUCGCCCGACUGccGCCcugGUGcGACGCCc -3'
miRNA:   3'- ccGGCGGGUUGAC--CGG---UAC-CUGCGGa -5'
23150 5' -61 NC_005178.1 + 14077 0.69 0.212822
Target:  5'- cGGCCGagCAGCgGGCCGgcuucgcgccGGGCGCCc -3'
miRNA:   3'- -CCGGCggGUUGaCCGGUa---------CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 27657 0.68 0.224282
Target:  5'- uGCCGCCgCuGCcgUGGgCAUGGGCGCg- -3'
miRNA:   3'- cCGGCGG-GuUG--ACCgGUACCUGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.