miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 30540 0.66 0.311909
Target:  5'- gGGCUGUgCAACaUGGCCuuccucGCGCCUg -3'
miRNA:   3'- -CCGGCGgGUUG-ACCGGuacc--UGCGGA- -5'
23150 5' -61 NC_005178.1 + 7391 0.66 0.311909
Target:  5'- uGGCCGCCCGuauaGCC---GACGCCa -3'
miRNA:   3'- -CCGGCGGGUugacCGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 34034 0.66 0.30433
Target:  5'- cGuuGUCCAcguagaagaUGGCCG-GGACGCCg -3'
miRNA:   3'- cCggCGGGUug-------ACCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 35379 0.66 0.302084
Target:  5'- cGGCUGCugacgaacaCCAGCgagGGCCAacuggccccggcgcUGGcCGCCa -3'
miRNA:   3'- -CCGGCG---------GGUUGa--CCGGU--------------ACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 4649 0.66 0.296894
Target:  5'- -aCCaCCCAACUGGCCaAUGGcAUgGCCg -3'
miRNA:   3'- ccGGcGGGUUGACCGG-UACC-UG-CGGa -5'
23150 5' -61 NC_005178.1 + 9357 0.66 0.296894
Target:  5'- uGCCG-CCAGCagucGCCA-GGGCGCCg -3'
miRNA:   3'- cCGGCgGGUUGac--CGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 25830 0.67 0.289599
Target:  5'- cGGCaCGUCUGACgccaUGGCCGUGGcCGgCa -3'
miRNA:   3'- -CCG-GCGGGUUG----ACCGGUACCuGCgGa -5'
23150 5' -61 NC_005178.1 + 28648 0.67 0.289599
Target:  5'- gGGCCGaUCCuGCUGGCCcagggucUGGAUGUa- -3'
miRNA:   3'- -CCGGC-GGGuUGACCGGu------ACCUGCGga -5'
23150 5' -61 NC_005178.1 + 16561 0.67 0.289599
Target:  5'- gGGCCGaCCUGGCc-GCCAUGGcaACGUCa -3'
miRNA:   3'- -CCGGC-GGGUUGacCGGUACC--UGCGGa -5'
23150 5' -61 NC_005178.1 + 13995 0.67 0.289599
Target:  5'- cGGuuGCCCgAGCUGGuggaCCAcccGGACgGCCa -3'
miRNA:   3'- -CCggCGGG-UUGACC----GGUa--CCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 12049 0.67 0.289599
Target:  5'- uGGCCcugGCCCuguucCUGGUgAUGGuugcgaccaGCGCCUg -3'
miRNA:   3'- -CCGG---CGGGuu---GACCGgUACC---------UGCGGA- -5'
23150 5' -61 NC_005178.1 + 21192 0.67 0.282446
Target:  5'- cGCCGCCCGacucGCUGGUCuggcUGGugagcgUGCCg -3'
miRNA:   3'- cCGGCGGGU----UGACCGGu---ACCu-----GCGGa -5'
23150 5' -61 NC_005178.1 + 18184 0.67 0.282446
Target:  5'- uGGCgGUUCGGCUGcGCgGUGG-CGUCUa -3'
miRNA:   3'- -CCGgCGGGUUGAC-CGgUACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 16592 0.67 0.282446
Target:  5'- -aCCGCCC--CUGGUCAagcUGGGCGUCc -3'
miRNA:   3'- ccGGCGGGuuGACCGGU---ACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 12370 0.67 0.282446
Target:  5'- aGCC-CCCGGCgaaGCCAUGGuugacCGCCa -3'
miRNA:   3'- cCGGcGGGUUGac-CGGUACCu----GCGGa -5'
23150 5' -61 NC_005178.1 + 2822 0.67 0.282446
Target:  5'- cGGCCGaCCCgAACgacGGUUucagGGAUGCCg -3'
miRNA:   3'- -CCGGC-GGG-UUGa--CCGGua--CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 33792 0.67 0.282446
Target:  5'- uGCCGCCCuuggcgaUGGCCcgGcGCGUCa -3'
miRNA:   3'- cCGGCGGGuug----ACCGGuaCcUGCGGa -5'
23150 5' -61 NC_005178.1 + 4014 0.67 0.282446
Target:  5'- aGCCaUCCAAUUuaGGCCAUGG-CGCUUg -3'
miRNA:   3'- cCGGcGGGUUGA--CCGGUACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 28552 0.67 0.275434
Target:  5'- gGGCCGUCC-GCcGcGCCAccggGGGCGUCg -3'
miRNA:   3'- -CCGGCGGGuUGaC-CGGUa---CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 12098 0.67 0.268561
Target:  5'- uGGUCGCgUGGCgggccUGGCCgAUGGGCGCg- -3'
miRNA:   3'- -CCGGCGgGUUG-----ACCGG-UACCUGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.