miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 28980 0.67 0.268561
Target:  5'- uGCgCGCCC--CUGGCC-UGGGCGgCa -3'
miRNA:   3'- cCG-GCGGGuuGACCGGuACCUGCgGa -5'
23150 5' -61 NC_005178.1 + 12098 0.67 0.268561
Target:  5'- uGGUCGCgUGGCgggccUGGCCgAUGGGCGCg- -3'
miRNA:   3'- -CCGGCGgGUUG-----ACCGG-UACCUGCGga -5'
23150 5' -61 NC_005178.1 + 14253 0.67 0.257854
Target:  5'- aGGCgaGCCCuGGCgcuguucgucaagggUGGCCAgaucggGGACGCCc -3'
miRNA:   3'- -CCGg-CGGG-UUG---------------ACCGGUa-----CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 28315 0.67 0.255232
Target:  5'- gGGCCGCUgGAgUGGC--UGGugGCg- -3'
miRNA:   3'- -CCGGCGGgUUgACCGguACCugCGga -5'
23150 5' -61 NC_005178.1 + 15261 0.67 0.255232
Target:  5'- cGGCCGCagaccaCGACgaUGGCCcc-GACGCCc -3'
miRNA:   3'- -CCGGCGg-----GUUG--ACCGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 25443 0.67 0.255232
Target:  5'- cGGCgCGCCCAuc-GGCCA-GGccCGCCa -3'
miRNA:   3'- -CCG-GCGGGUugaCCGGUaCCu-GCGGa -5'
23150 5' -61 NC_005178.1 + 4532 0.68 0.248773
Target:  5'- cGGCCuGCCCAucgaGCC--GGACGCCg -3'
miRNA:   3'- -CCGG-CGGGUugacCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 22856 0.68 0.242451
Target:  5'- gGGCUGCCCAuCcGGCCAgcagaUGaucGCGCCg -3'
miRNA:   3'- -CCGGCGGGUuGaCCGGU-----ACc--UGCGGa -5'
23150 5' -61 NC_005178.1 + 3064 0.68 0.230206
Target:  5'- cGCCGCCCGGacaUGagcguucCCGacUGGGCGCCUg -3'
miRNA:   3'- cCGGCGGGUUg--ACc------GGU--ACCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 27657 0.68 0.224282
Target:  5'- uGCCGCCgCuGCcgUGGgCAUGGGCGCg- -3'
miRNA:   3'- cCGGCGG-GuUG--ACCgGUACCUGCGga -5'
23150 5' -61 NC_005178.1 + 14077 0.69 0.212822
Target:  5'- cGGCCGagCAGCgGGCCGgcuucgcgccGGGCGCCc -3'
miRNA:   3'- -CCGGCggGUUGaCCGGUa---------CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 18525 0.69 0.207283
Target:  5'- --gUGCCCGACUGGaUCA-GGACGCUg -3'
miRNA:   3'- ccgGCGGGUUGACC-GGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 14182 0.69 0.207283
Target:  5'- -aUCGCCCGACUGccGCCcugGUGcGACGCCc -3'
miRNA:   3'- ccGGCGGGUUGAC--CGG---UAC-CUGCGGa -5'
23150 5' -61 NC_005178.1 + 2731 0.69 0.207283
Target:  5'- cGCCGCCCug--GGCgA-GGugGCCa -3'
miRNA:   3'- cCGGCGGGuugaCCGgUaCCugCGGa -5'
23150 5' -61 NC_005178.1 + 3643 0.69 0.207283
Target:  5'- aGGCCGCCgAGCaucgccGCCAggcgcggcaGGACGCCc -3'
miRNA:   3'- -CCGGCGGgUUGac----CGGUa--------CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 31296 0.69 0.207283
Target:  5'- aGCCGugaCCCAGCgccgGGCUAUGcgccuGGCGCCg -3'
miRNA:   3'- cCGGC---GGGUUGa---CCGGUAC-----CUGCGGa -5'
23150 5' -61 NC_005178.1 + 17127 0.69 0.201869
Target:  5'- aGGCCgaggguuucGCgCAGCuUGGCCAgguUGGuCGCCUg -3'
miRNA:   3'- -CCGG---------CGgGUUG-ACCGGU---ACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 27878 0.69 0.19141
Target:  5'- aGGCCGCCCAgggcaACUGGgUCAacgGGGCGaCg -3'
miRNA:   3'- -CCGGCGGGU-----UGACC-GGUa--CCUGCgGa -5'
23150 5' -61 NC_005178.1 + 21098 0.69 0.19141
Target:  5'- aGGUCGUCCGugUGcGCCGccUGaACGCCUu -3'
miRNA:   3'- -CCGGCGGGUugAC-CGGU--ACcUGCGGA- -5'
23150 5' -61 NC_005178.1 + 36113 0.69 0.19141
Target:  5'- uGCCGCCCAgguuggGCUGGCgGgugcaGGugGCg- -3'
miRNA:   3'- cCGGCGGGU------UGACCGgUa----CCugCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.