miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 14736 0.86 0.009314
Target:  5'- cGGUCGCUCAGCUGGCgGaUGGACGCCUc -3'
miRNA:   3'- -CCGGCGGGUUGACCGgU-ACCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 25443 0.67 0.255232
Target:  5'- cGGCgCGCCCAuc-GGCCA-GGccCGCCa -3'
miRNA:   3'- -CCG-GCGGGUugaCCGGUaCCu-GCGGa -5'
23150 5' -61 NC_005178.1 + 20755 0.67 0.268561
Target:  5'- gGGCCGgCaGGCUGGCCAgcaccUGGuccaGCGCUUc -3'
miRNA:   3'- -CCGGCgGgUUGACCGGU-----ACC----UGCGGA- -5'
23150 5' -61 NC_005178.1 + 1035 0.66 0.3355
Target:  5'- cGGCCGuCCCAuc--GCCAcuagcaaaucuUGGACGCgCUg -3'
miRNA:   3'- -CCGGC-GGGUugacCGGU-----------ACCUGCG-GA- -5'
23150 5' -61 NC_005178.1 + 9486 0.73 0.104563
Target:  5'- gGGUCGCCaucCUGGCCA-GGuCGCCa -3'
miRNA:   3'- -CCGGCGGguuGACCGGUaCCuGCGGa -5'
23150 5' -61 NC_005178.1 + 8572 0.73 0.107543
Target:  5'- uGCCGCCCA---GGCCAgGGGCGCg- -3'
miRNA:   3'- cCGGCGGGUugaCCGGUaCCUGCGga -5'
23150 5' -61 NC_005178.1 + 26397 0.71 0.134405
Target:  5'- aGGaaGCCCAggGCggcGGCCA-GGGCGCCc -3'
miRNA:   3'- -CCggCGGGU--UGa--CCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 10726 0.71 0.144391
Target:  5'- gGGCCgaagacaGCCCcGCUGGCCAcagcgcgucccggcUGGAagGCCUg -3'
miRNA:   3'- -CCGG-------CGGGuUGACCGGU--------------ACCUg-CGGA- -5'
23150 5' -61 NC_005178.1 + 17127 0.69 0.201869
Target:  5'- aGGCCgaggguuucGCgCAGCuUGGCCAgguUGGuCGCCUg -3'
miRNA:   3'- -CCGG---------CGgGUUG-ACCGGU---ACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 22856 0.68 0.242451
Target:  5'- gGGCUGCCCAuCcGGCCAgcagaUGaucGCGCCg -3'
miRNA:   3'- -CCGGCGGGUuGaCCGGU-----ACc--UGCGGa -5'
23150 5' -61 NC_005178.1 + 14182 0.69 0.207283
Target:  5'- -aUCGCCCGACUGccGCCcugGUGcGACGCCc -3'
miRNA:   3'- ccGGCGGGUUGAC--CGG---UAC-CUGCGGa -5'
23150 5' -61 NC_005178.1 + 34639 0.7 0.167321
Target:  5'- uGCgGCUCGAcCUGGCCGaGGcGCGCCa -3'
miRNA:   3'- cCGgCGGGUU-GACCGGUaCC-UGCGGa -5'
23150 5' -61 NC_005178.1 + 12202 0.77 0.048275
Target:  5'- cGGCCaGCCUGGCUGG-CAUGGuCGCCa -3'
miRNA:   3'- -CCGG-CGGGUUGACCgGUACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 18525 0.69 0.207283
Target:  5'- --gUGCCCGACUGGaUCA-GGACGCUg -3'
miRNA:   3'- ccgGCGGGUUGACC-GGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 15778 0.74 0.090794
Target:  5'- cGCCGCCUGGCUGGCguUGGAaagcggagcggUGCCc -3'
miRNA:   3'- cCGGCGGGUUGACCGguACCU-----------GCGGa -5'
23150 5' -61 NC_005178.1 + 32441 0.71 0.150044
Target:  5'- gGGCCGgaaCCCAGCUcagcacgcGGCCAUGGAaGCg- -3'
miRNA:   3'- -CCGGC---GGGUUGA--------CCGGUACCUgCGga -5'
23150 5' -61 NC_005178.1 + 14077 0.69 0.212822
Target:  5'- cGGCCGagCAGCgGGCCGgcuucgcgccGGGCGCCc -3'
miRNA:   3'- -CCGGCggGUUGaCCGGUa---------CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 14253 0.67 0.257854
Target:  5'- aGGCgaGCCCuGGCgcuguucgucaagggUGGCCAgaucggGGACGCCc -3'
miRNA:   3'- -CCGg-CGGG-UUG---------------ACCGGUa-----CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 28788 0.73 0.096082
Target:  5'- cGCCGCCCGcacGCUGGCCAaGu-CGCCc -3'
miRNA:   3'- cCGGCGGGU---UGACCGGUaCcuGCGGa -5'
23150 5' -61 NC_005178.1 + 25181 0.72 0.12716
Target:  5'- aGGCCGCCgGuAgUGGCC-UGGGCGgCa -3'
miRNA:   3'- -CCGGCGGgU-UgACCGGuACCUGCgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.